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OBB
- Class in
ProGAL.geom3d.volumes
OBB(Point, Vector, Vector, Vector)
- Constructor for class ProGAL.geom3d.volumes.
OBB
OBB(Point, Vector[], double[])
- Constructor for class ProGAL.geom3d.volumes.
OBB
occupancy
- Variable in class ProGAL.proteins.
PDBFile.AtomRecord
OldTESS
- Class in
ProGAL.geom3d.tess
OldTESS()
- Constructor for class ProGAL.geom3d.tess.
OldTESS
onBoundary()
- Method in class ProGAL.geom2d.delaunay.
Vertex
onCH(Triangle)
- Method in class ProGAL.geom2d.delaunay.
DTWithBigPoints
onCircle(Point)
- Method in class ProGAL.geom2d.
Circle
oneoneMove(Point, Point, Point, Point)
- Static method in class ProGAL.geom2d.
Circle
opposite(CVertex)
- Method in class ProGAL.geom3d.complex.
CEdge
opposites
- Variable in class ProGAL.geom3d.tessellation.BowyerWatson.
Tet
oppositeTriangle(CVertex)
- Method in class ProGAL.geom3d.complex.
CTetrahedron
oppositeVertex(CTriangle)
- Method in class ProGAL.geom3d.complex.
CTetrahedron
TODO: Copy to Tetrahedron
oppositeVertex(CEdge)
- Method in class ProGAL.geom3d.complex.
CTriangle
TODO: Copy to Triangle
oppositeVertices(int)
- Method in class ProGAL.geomNd.complex.
Tessel
optimalRotation(Point[], Point[])
- Method in class ProGAL.geom3d.
Line
Return the optimal right-hand rotation around the line that brings the m-points as close to the f-points as possible.
optimalSuperposition(List<Point>, List<Point>)
- Static method in class ProGAL.geom3d.superposition.
RMSD
optimalSuperposition(List<Point>, List<Point>, List<Integer>)
- Static method in class ProGAL.geom3d.superposition.
RMSD
orient(Point, Point, Point, Point)
- Method in class ProGAL.geom3d.predicates.
ExactJavaPredicates
orient(Point, Point, Point, Point)
- Method in class ProGAL.geom3d.predicates.
ExactNativePredicates
orient(Point, Point, Point, Point)
- Method in class ProGAL.geom3d.predicates.
InexactJavaPredicates
orient(Point, Point, Point, Point)
- Method in class ProGAL.geom3d.predicates.
InexactRegularJavaPredicates
orient(Point, Point, Point, Point)
- Method in class ProGAL.geom3d.predicates.
Predicates
orientation(Point, Point, Point, Point)
- Static method in class ProGAL.geom3d.
Point
orientation(Point, Point, Point, Point, Point)
- Static method in class ProGAL.geom3d.
Point
orientPredCounter
- Static variable in class ProGAL.geom2d.delaunay.
DTWithBigPoints
origo
- Static variable in class ProGAL.geom2d.
Point
orthogonalProjection(Point)
- Method in class ProGAL.geom3d.
Line
Returns the othogonal projection of the point q onto this line.
orthogonalProjection(PointList)
- Method in class ProGAL.geom3d.
Line
Returns the smallest segment that contains all orthogonol projections of a point set onto this line.
orthogonalProjectionParameter(Point)
- Method in class ProGAL.geom3d.
Line
Returns the line-parameter of the othogonal projection of the point q onto this line.
orthogonalProjectionParameters(PointList)
- Method in class ProGAL.geom3d.
Line
Returns the line-parameters of the end-points of the smallest segment that contains all orthogonol projections of a point set onto this line.
orthonormalizeThis()
- Method in class ProGAL.math.
Matrix
Run Gram-Schmidt orthonormalization procedure.
outerProduct(Vector)
- Method in class ProGAL.geomNd.
Vector
overlaps(Volume)
- Method in class ProGAL.geom3d.volumes.
Cone
overlaps(Volume)
- Method in class ProGAL.geom3d.volumes.
Cylinder
overlaps(Volume)
- Method in class ProGAL.geom3d.volumes.
Lens
overlaps(LSS)
- Method in class ProGAL.geom3d.volumes.
LSS
overlaps(Volume)
- Method in class ProGAL.geom3d.volumes.
LSS
overlaps(OBB)
- Method in class ProGAL.geom3d.volumes.
OBB
Returns true iff this box has an overlap with b.
overlaps(Volume)
- Method in class ProGAL.geom3d.volumes.
OBB
overlaps(Volume)
- Method in class ProGAL.geom3d.volumes.
RSS
overlaps(RSS)
- Method in class ProGAL.geom3d.volumes.
RSS
674HOps
overlaps(Volume)
- Method in class ProGAL.geom3d.volumes.
Sphere
Returns true if the sphere overlaps with
vol
.
overlaps(Volume)
- Method in class ProGAL.geom3d.volumes.
Tetrahedron
overlaps(Volume)
- Method in interface ProGAL.geom3d.volumes.
Volume
Determine if this volume overlaps vol.
overlaps(SecondaryStructure.SSSegment)
- Method in class ProGAL.proteins.belta.
SecondaryStructure.SSSegment
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