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Packages | |
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ProGAL | ProGAL is a library containing geometric datastructures and algorithms with special emphasis on supporting representation and analysis of protein structures. |
ProGAL.dataStructures | |
ProGAL.dataStructures.rangeSearching | |
ProGAL.dataStructures.rangeSearching.rangeTree | |
ProGAL.dataStructures.viewer | |
ProGAL.geom2d | This package contains classes that are all related to two-dimensional geometric concepts. |
ProGAL.geom2d.convexHull | |
ProGAL.geom2d.delaunay | |
ProGAL.geom2d.viewer | All classes required for the 2D scene viewer J2DScene . |
ProGAL.geom3d | This package contains classes that are all related to three-dimensional geometric concepts. |
ProGAL.geom3d.complex | A simplicial complex is a topological space of a particular kind, constructed by "gluing together" points, line segments, triangles, and their n-dimensional counterparts. |
ProGAL.geom3d.complex.alphaComplex | An alpha complex for a set of d-dimensional points and a real number alpha is a subset of the Delaunay complex where all simplices that can be enclosed by an alpha-probe (a hypersphere of radius alpha), without the probe enclosing any points, are removed. |
ProGAL.geom3d.complex.alphaComplex.tests | |
ProGAL.geom3d.complex.delaunayComplex | A Delaunay complex for a set of d-dimensional points is a tesselation of the points such that no point is inside the circumscribing hypersphere of the d-simplices (for the 3D case: Tetrahedra). |
ProGAL.geom3d.complex.delaunayComplex.tests | |
ProGAL.geom3d.complex.tessellation | |
ProGAL.geom3d.predicates | |
ProGAL.geom3d.predicates.tests | |
ProGAL.geom3d.superposition | |
ProGAL.geom3d.superposition.tests | |
ProGAL.geom3d.surface | |
ProGAL.geom3d.tess | |
ProGAL.geom3d.tessellation.BowyerWatson | |
ProGAL.geom3d.tests | |
ProGAL.geom3d.viewer | All classes required for the 3D scene viewer J3DScene . |
ProGAL.geom3d.volumes | |
ProGAL.geom3d.volumes.tests | |
ProGAL.geomNd | This package contains classes that are all related to Euclidean geometric concepts of dimension larger than three. |
ProGAL.geomNd.complex | |
ProGAL.geomNd.complex.delaunayComplex | |
ProGAL.geomNd.complex.delaunayComplex.tests | |
ProGAL.geomNd.tests | |
ProGAL.io | A set of classes containing static methods for input and output (both to/from file system and from web). |
ProGAL.math | This package contains math-classes that are not necessarily related to geometrical concepts. |
ProGAL.math.test | |
ProGAL.proteins | |
ProGAL.proteins.belta | |
ProGAL.proteins.belta.tests | |
ProGAL.proteins.beltaStructure | |
ProGAL.proteins.beltaStructure.bnb | |
ProGAL.proteins.beltaStructure.bnb.lowerBounds | |
ProGAL.proteins.beltaStructure.loop | |
ProGAL.proteins.beltaStructure.sheet | |
ProGAL.proteins.beltaStructure.sheetLoop | |
ProGAL.proteins.chainTree | |
ProGAL.proteins.dunbrack | |
ProGAL.proteins.structure | |
ProGAL.proteins.structure.generators | |
ProGAL.proteins.viewer | |
ProGAL.statistics | |
ProGAL.statistics.tests |
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