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java.lang.Object ProGAL.proteins.PDBFile.AtomRecord
public static class PDBFile.AtomRecord
Field Summary | |
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java.lang.String |
aaType
The type of amino acid in a three-letter code, for example: TYR, ALA or ARG |
java.util.LinkedList<Point> |
alternativeCoords
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int |
atomNumber
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java.lang.String |
atomType
The type of atom. |
char |
chain
A character identifying the chain |
Point |
coords
|
java.lang.String |
element
The atom element. |
double |
occupancy
|
int |
residueNumber
|
Method Summary | |
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char |
getSingleCharAAType()
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boolean |
isHydrogen()
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boolean |
isHydrogenAcceptor()
Returns true if the atom can act as a hydrogen acceptor in a hydrogen bond |
boolean |
isHydrogenDonor()
Returns true if the atom can act as a hydrogen donor in a hydrogen bond |
boolean |
isOnBackbone()
|
java.lang.String |
toString()
Returns a string representation of this ATOM-record that follows the PDB-file format. |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
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public java.lang.String atomType
public java.lang.String aaType
public java.lang.String element
public char chain
public int atomNumber
public int residueNumber
public Point coords
public double occupancy
public java.util.LinkedList<Point> alternativeCoords
Method Detail |
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public boolean isOnBackbone()
public boolean isHydrogen()
public boolean isHydrogenDonor()
public boolean isHydrogenAcceptor()
public java.lang.String toString()
toString
in class java.lang.Object
public char getSingleCharAAType()
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