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B
bases
- Variable in class ProGAL.geom3d.
Rectangle
beamDetector()
- Method in class ProGAL.geom2d.
ConvexPolygon
below(Point)
- Method in class ProGAL.geom3d.
Plane
Returns 1/0/-1 if point p is below/on/above this plane
Benchmark
- Class in
ProGAL
Benchmark
- Class in
ProGAL.dataStructures.rangeSearching
Benchmark()
- Constructor for class ProGAL.dataStructures.rangeSearching.
Benchmark
BetaTopology
- Class in
ProGAL.proteins.belta
Representation of a beta-topology.
BetaTopology(SecondaryStructure)
- Constructor for class ProGAL.proteins.belta.
BetaTopology
Constructs a beta-topology associated with the specified secondary structure but with no pairings.
BetaTopology(SecondaryStructure, boolean[][])
- Constructor for class ProGAL.proteins.belta.
BetaTopology
Constructs a beta-topology associated with the specified secondary structure and pairings.
betaTopology
- Variable in class ProGAL.proteins.beltaStructure.sheetLoop.
SheetLoopStructure
BetaTopologyTest
- Class in
ProGAL.proteins.belta.tests
BetaTopologyTest()
- Constructor for class ProGAL.proteins.belta.tests.
BetaTopologyTest
BettiDebugger
- Class in
ProGAL.geom3d.complex.alphaComplex.tests
BettiDebugger()
- Constructor for class ProGAL.geom3d.complex.alphaComplex.tests.
BettiDebugger
BigDecimalPredicates
- Class in
ProGAL.geom3d.tessellation.BowyerWatson
bigDouble
- Static variable in class ProGAL.math.
Constants
bigTet(Tetr)
- Method in class ProGAL.geom3d.tessellation.BowyerWatson.
RegularTessellation
binarySearch(SortTool, Object)
- Method in class ProGAL.dataStructures.
Set
BinaryTreePainter
- Class in
ProGAL.dataStructures.viewer
BinaryTreePainter(InteractiveBinaryTree)
- Constructor for class ProGAL.dataStructures.viewer.
BinaryTreePainter
BinaryTreePainter.PNode
- Class in
ProGAL.dataStructures.viewer
BinaryTreePainter.PNode(InteractiveBinaryTree, int)
- Constructor for class ProGAL.dataStructures.viewer.
BinaryTreePainter.PNode
binCenters()
- Method in class ProGAL.statistics.
Histogram
binMinima()
- Method in class ProGAL.statistics.
Histogram
binom(int, int)
- Static method in class ProGAL.math.
Combinatorics
Calculate the binomial coefficient.
binWidths()
- Method in class ProGAL.statistics.
Histogram
blowUp(double)
- Method in class ProGAL.geom3d.volumes.
Tetrahedron
BnBNode
- Class in
ProGAL.proteins.beltaStructure.bnb
A node in a branch and bound tree corresponding to a partial protein structure.
BnBSolver
- Class in
ProGAL.proteins.beltaStructure.bnb
BnBSolver(BetaTopology, LowerBound)
- Constructor for class ProGAL.proteins.beltaStructure.bnb.
BnBSolver
BnBTreeExplorer
- Class in
ProGAL.proteins.beltaStructure.bnb
BnBTreeExplorer(BetaTopology)
- Constructor for class ProGAL.proteins.beltaStructure.bnb.
BnBTreeExplorer
boundaryFlipIn(TriangulationVertex, TriangulationVertex, TriangulationVertex)
- Method in class ProGAL.geom2d.
Triangulation
boundaryFlipIn(TriangulationVertex, TriangulationVertex, TriangulationVertex, J2DScene, boolean)
- Method in class ProGAL.geom2d.
Triangulation
boundaryFlipOut(TriangulationVertex, TriangulationFace, J2DScene, boolean)
- Method in class ProGAL.geom2d.
Triangulation
BowyerWatson
- Class in
ProGAL.geomNd.complex.delaunayComplex
A Delaunay complex for a set of d-dimensional points is a tesselation of the points such that no point is inside the circumscribing hypersphere of the d-simplices (for the 3D case: Tetrahedra).
BowyerWatson(List<Point>)
- Constructor for class ProGAL.geomNd.complex.delaunayComplex.
BowyerWatson
Builds the Delaunay complex of the specified point-set using Bowyer-Watson algorithm
BowyerWatsonTest
- Class in
ProGAL.geomNd.complex.delaunayComplex.tests
BowyerWatsonTest()
- Constructor for class ProGAL.geomNd.complex.delaunayComplex.tests.
BowyerWatsonTest
Branchable
- Interface in
ProGAL.proteins.beltaStructure.bnb
A part of a protein chain.
BWViewer
- Class in
ProGAL.geomNd.complex.delaunayComplex
BWViewer()
- Constructor for class ProGAL.geomNd.complex.delaunayComplex.
BWViewer
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