ProGAL.proteins.belta
Class SecondaryStructure.SSSegment

java.lang.Object
  ProGAL.proteins.belta.SecondaryStructure.SSSegment

Enclosing class:

SecondaryStructure

public static class SecondaryStructure.SSSegment
extends java.lang.Object

A secondary structure segment of either helix, coil or strand. The only function is to hold indices of start and end residues, the length, the index of the segment in the secondary structure and the type.

Field Summary

int	end The residue-index of the last amino acid in this segment PLUS ONE.
int	length
int	segmentIndex
int	start The residue-index of the first amino acid in this segment
SSType	type

Method Summary

boolean	contains(int res)
int	midpoint()
boolean	overlaps(SecondaryStructure.SSSegment seg)
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

start

public final int start

The residue-index of the first amino acid in this segment

end

public final int end

The residue-index of the last amino acid in this segment PLUS ONE.

length

public final int length

segmentIndex

public final int segmentIndex

type

public final SSType type

Method Detail

overlaps

public boolean overlaps(SecondaryStructure.SSSegment seg)

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

contains

public boolean contains(int res)

midpoint

public int midpoint()