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label()
- Method in interface ProGAL.dataStructures.viewer.
InteractiveBinaryTree
label()
- Method in class ProGAL.geom3d.complex.alphaComplex.
Node
left()
- Method in interface ProGAL.dataStructures.viewer.
InteractiveBinaryTree
left
- Variable in class ProGAL.geom3d.complex.alphaComplex.
Node
left()
- Method in class ProGAL.geom3d.complex.alphaComplex.
Node
leftExtremePoint()
- Method in class ProGAL.geom2d.
PointSet
returns the leftmost point (in case of ties, the topmost one is returned
leftExtremePointIndx()
- Method in class ProGAL.geom2d.
PointSet
returns the index of the leftmost point (in case of ties, index of the topmost one is returned)
leftExtremePointIndx()
- Method in class ProGAL.geom2d.
Polygon
returns the index of the leftmost point (in case of ties, index of the bottommost one is returned)
leftindex
- Variable in class ProGAL.dataStructures.rangeSearching.rangeTree.
RangeTreeAssocValue
leftLegColor()
- Method in interface ProGAL.dataStructures.viewer.
InteractiveBinaryTree
leftLegColor()
- Method in class ProGAL.geom3d.complex.alphaComplex.
Node
leftTurn(Point, Point, Point)
- Static method in class ProGAL.geom2d.
Point
Returns true if points a, b and c make a left turn at b
leftTurn(Vector, Vector)
- Static method in class ProGAL.geom2d.
Vector
legalizeEdge(TriangulationFace, int, boolean)
- Method in class ProGAL.geom2d.
Triangulation
legalizeEdge(TriangulationFace, int, boolean, J2DScene)
- Method in class ProGAL.geom2d.
Triangulation
length()
- Method in class ProGAL.geom2d.
Vector
length()
- Method in class ProGAL.geomNd.
Vector
Get the length of this vector.
length
- Variable in class ProGAL.proteins.belta.
SecondaryStructure.SSSegment
length()
- Method in class ProGAL.proteins.structure.
CBond
Lens
- Class in
ProGAL.geom3d.volumes
A lens is the intersection between two spheres.
Lens(Sphere, Sphere)
- Constructor for class ProGAL.geom3d.volumes.
Lens
Construct a lens from the two spheres.
LensTest
- Class in
ProGAL.geom3d.volumes.tests
LensTest()
- Constructor for class ProGAL.geom3d.volumes.tests.
LensTest
Line
- Class in
ProGAL.geom2d
Line(Point, Vector)
- Constructor for class ProGAL.geom2d.
Line
creates a line through a given point and with a given normal vector
Line(Point, Point)
- Constructor for class ProGAL.geom2d.
Line
creates a line through 2 given points
Line(LineSegment)
- Constructor for class ProGAL.geom2d.
Line
creates a line through a given segment
Line(double, double, double)
- Constructor for class ProGAL.geom2d.
Line
creates a line ax + by + c = 0
Line
- Class in
ProGAL.geom3d
A line represented by a point and a direction.
Line(Vector)
- Constructor for class ProGAL.geom3d.
Line
Constructs a line through origo with direction d.
Line(Point, Vector)
- Constructor for class ProGAL.geom3d.
Line
Constructs a line through p with direction d.
Line(LineSegment)
- Constructor for class ProGAL.geom3d.
Line
Constructs a line through the segment s.
Line(Point, Point)
- Constructor for class ProGAL.geom3d.
Line
Constructs a line through the two specified points.
LinearRangeSearch
- Class in
ProGAL.dataStructures.rangeSearching
LinearRangeSearch(int)
- Constructor for class ProGAL.dataStructures.rangeSearching.
LinearRangeSearch
LineSegment
- Class in
ProGAL.geom2d
LineSegment(Point, Point)
- Constructor for class ProGAL.geom2d.
LineSegment
LineSegment
- Class in
ProGAL.geom3d
A line segment spanned by two points, a and b.
LineSegment(Point, Point)
- Constructor for class ProGAL.geom3d.
LineSegment
Constructs a segment between points a and b.
LineSegment(Point, Vector)
- Constructor for class ProGAL.geom3d.
LineSegment
Constructs a segment from a to a+v.
LineTest
- Class in
ProGAL.geom3d.tests
LineTest()
- Constructor for class ProGAL.geom3d.tests.
LineTest
LoopStructure
- Class in
ProGAL.proteins.beltaStructure.loop
LoopStructure(SecondaryStructure, int, int, Atom[])
- Constructor for class ProGAL.proteins.beltaStructure.loop.
LoopStructure
LoopStructure(SecondaryStructure, int, int)
- Constructor for class ProGAL.proteins.beltaStructure.loop.
LoopStructure
lowerBound(BnBNode, BnBSolver)
- Method in class ProGAL.proteins.beltaStructure.bnb.lowerBounds.
CN_ClashLowerBound
lowerBound(BnBNode, BnBSolver)
- Method in class ProGAL.proteins.beltaStructure.bnb.lowerBounds.
Diameter_Clash_LowerBound
LowerBound
- Interface in
ProGAL.proteins.beltaStructure.bnb.lowerBounds
lowerBound(BnBNode, BnBSolver)
- Method in interface ProGAL.proteins.beltaStructure.bnb.lowerBounds.
LowerBound
LSC
- Class in
ProGAL.geom2d
A line-swept circle.
LSC(LineSegment, double)
- Constructor for class ProGAL.geom2d.
LSC
LSC(Point, Point, double)
- Constructor for class ProGAL.geom2d.
LSC
LSS
- Class in
ProGAL.geom3d.volumes
A line-segment swept sphere (also known as a line-swept-sphere, capsule or sometimes 'cigar') class.
LSS(Point, Point, double)
- Constructor for class ProGAL.geom3d.volumes.
LSS
Construct a capsule using two endpoints (center of hemispheres) and a radius (used both for hemispheres and cylinder shape).
LSS(LineSegment, double)
- Constructor for class ProGAL.geom3d.volumes.
LSS
Construct a capsule using a line-segment and a radius (used both for hemispheres and cylinder shape).
LUDecomposition
- Class in
ProGAL.math
LU Decomposition.
LUDecomposition(Matrix)
- Constructor for class ProGAL.math.
LUDecomposition
LU Decomposition
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