A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

M

main(String[]) - Static method in class ProGAL.dataStructures.DLCyclicList

main(String[]) - Static method in class ProGAL.dataStructures.DLList

main(String[]) - Static method in class ProGAL.dataStructures.Heap

main(String[]) - Static method in class ProGAL.dataStructures.rangeSearching.Benchmark

main(String[]) - Static method in class ProGAL.dataStructures.rangeSearching.GridMap

main(String[]) - Static method in class ProGAL.dataStructures.rangeSearching.LinearRangeSearch

main(String[]) - Static method in class ProGAL.dataStructures.rangeSearching.rangeTree.RangeTree

Test the range tree.

main(String[]) - Static method in class ProGAL.dataStructures.Set

main(String[]) - Static method in class ProGAL.dataStructures.SetIterator

main(String[]) - Static method in class ProGAL.dataStructures.SorterQuick

main(String[]) - Static method in class ProGAL.dataStructures.viewer.BinaryTreePainter

main(String[]) - Static method in class ProGAL.geom2d.ApolloniusSolver

main(String[]) - Static method in class ProGAL.geom2d.Circle

main(String[]) - Static method in class ProGAL.geom2d.convexHull.DivideAndConquer

main(String[]) - Static method in class ProGAL.geom2d.convexHull.GrahamScan

main(String[]) - Static method in class ProGAL.geom2d.ConvexPolygon

main(String[]) - Static method in class ProGAL.geom2d.delaunay.DTNoBigPoints

main(String[]) - Static method in class ProGAL.geom2d.delaunay.DTWithBigPoints

main(String[]) - Static method in class ProGAL.geom2d.delaunay.Kinetic

main(String[]) - Static method in class ProGAL.geom2d.Point

main(String[]) - Static method in class ProGAL.geom2d.Polygon

main(String[]) - Static method in class ProGAL.geom2d.Triangle

main(String[]) - Static method in class ProGAL.geom2d.Triangulation

main(String[]) - Static method in class ProGAL.geom2d.viewer.J2DScene

main(String[]) - Static method in class ProGAL.geom3d.ApolloniusSolver

main(String[]) - Static method in class ProGAL.geom3d.Circle

main(String[]) - Static method in class ProGAL.geom3d.complex.alphaComplex.AlphaComplex

main(String[]) - Static method in class ProGAL.geom3d.complex.alphaComplex.EiffelPointList

main(String[]) - Static method in class ProGAL.geom3d.complex.alphaComplex.Interval

main(String[]) - Static method in class ProGAL.geom3d.complex.alphaComplex.tests.AlphaComplexDebugger

main(String[]) - Static method in class ProGAL.geom3d.complex.alphaComplex.tests.BettiDebugger

main(String[]) - Static method in class ProGAL.geom3d.complex.alphaComplex.VoidTree

main(String[]) - Static method in class ProGAL.geom3d.complex.delaunayComplex.DelaunayComplexRotation

main(String[]) - Static method in class ProGAL.geom3d.complex.delaunayComplex.tests.RegularComplexVisualTest

main(String[]) - Static method in class ProGAL.geom3d.complex.tessellation.DelaunayTessellation

main(String[]) - Static method in class ProGAL.geom3d.Plane

main(String[]) - Static method in class ProGAL.geom3d.Point

main(String[]) - Static method in class ProGAL.geom3d.superposition.GDT

main(String[]) - Static method in class ProGAL.geom3d.tess.TESS

main(String[]) - Static method in class ProGAL.geom3d.tessellation.BowyerWatson.RegularTessellation

main(String[]) - Static method in class ProGAL.geom3d.viewer.J3DScene

main(String[]) - Static method in class ProGAL.geom3d.volumes.Cylinder

main(String[]) - Static method in class ProGAL.geom3d.volumes.Lens

main(String[]) - Static method in class ProGAL.geom3d.volumes.Sphere

main(String[]) - Static method in class ProGAL.geom3d.volumes.Tetrahedron

main(String[]) - Static method in class ProGAL.geomNd.ApolloniusSolver

main(String[]) - Static method in class ProGAL.geomNd.complex.delaunayComplex.BowyerWatson

main(String[]) - Static method in class ProGAL.math.Trigonometry

main(String[]) - Static method in class ProGAL.proteins.belta.PDBFile

main(String[]) - Static method in class ProGAL.proteins.beltaStructure.bnb.BnBTreeExplorer

main(String[]) - Static method in class ProGAL.proteins.beltaStructure.bnb.SegmentStructure

main(String[]) - Static method in class ProGAL.proteins.beltaStructure.bnb.SheetStructure

main(String[]) - Static method in class ProGAL.proteins.beltaStructure.CanonicalSheet

main(String[]) - Static method in class ProGAL.proteins.beltaStructure.loop.CALoopStructure

main(String[]) - Static method in class ProGAL.proteins.beltaStructure.loop.CoilDatabase

main(String[]) - Static method in class ProGAL.proteins.beltaStructure.sheet.SheetAlignment

main(String[]) - Static method in class ProGAL.proteins.beltaStructure.sheetLoop.SheetLoopGUI

main(String[]) - Static method in class ProGAL.proteins.chainTree.ChainTree

main(String[]) - Static method in class ProGAL.proteins.dunbrack.RamachandranDistribution

main(String[]) - Static method in class ProGAL.proteins.PDBFile

main(String[]) - Static method in class ProGAL.proteins.PDBWebReader

main(String[]) - Static method in class ProGAL.proteins.ProteinComplex

main(String[]) - Static method in class ProGAL.proteins.viewer.CoilSurface

main(String[]) - Static method in class ProGAL.proteins.viewer.HelixSurface

main(String[]) - Static method in class ProGAL.proteins.viewer.PDBFileViewer

main(String[]) - Static method in class ProGAL.proteins.viewer.StrandSurface

makeSet(Object) - Method in class ProGAL.dataStructures.DisjointSet

makeSet(Object) - Method in class ProGAL.geom3d.complex.alphaComplex.DisjointSet

Create a new set containing the element o

matches(BetaTopology) - Method in class ProGAL.proteins.belta.BetaTopology

Determine if this beta-topology matches some other topology.

matches(SecondaryStructure) - Method in class ProGAL.proteins.belta.SecondaryStructure

Determine if this secondary structure matches ss.

Matrix - Class in ProGAL.math

Matrix(int, int) - Constructor for class ProGAL.math.Matrix

Construct an M by N matrix with zeros in all entries.

Matrix(double[][]) - Constructor for class ProGAL.math.Matrix

Construct a matrix from an array-of-array-of-double.

Matrix(int, int, int) - Constructor for class ProGAL.math.Matrix

Matrix.EigenvalueDecomposition - Class in ProGAL.math

Eigenvalues and eigenvectors of a real matrix.

Matrix.ImmutableMatrix - Class in ProGAL.math

Matrix.ImmutableMatrix(double[][]) - Constructor for class ProGAL.math.Matrix.ImmutableMatrix

Matrix3x3 - Class in ProGAL.math

Matrix3x3() - Constructor for class ProGAL.math.Matrix3x3

Matrix3x3(double[][]) - Constructor for class ProGAL.math.Matrix3x3

MatrixTest - Class in ProGAL.math.test

MatrixTest() - Constructor for class ProGAL.math.test.MatrixTest

midPoint(Point, Point) - Static method in class ProGAL.geom2d.Point

Returns the midpoint of two points.

midpoint() - Method in class ProGAL.proteins.belta.SecondaryStructure.SSSegment

minimumEnclosingCircle_bruteforce(List<Point>) - Static method in class ProGAL.geom2d.Circle

Deprecated.

minimumEnclosingCircle_Welzl(List<Point>) - Static method in class ProGAL.geom2d.Circle

minor(int, int) - Method in class ProGAL.math.Matrix

Return the minor, i.e.

mouseClicked(MouseEvent) - Method in class ProGAL.geom3d.viewer.Camera

mouseDragged(MouseEvent) - Method in class ProGAL.geom3d.viewer.Camera

mouseEntered(MouseEvent) - Method in class ProGAL.geom3d.viewer.Camera

mouseExited(MouseEvent) - Method in class ProGAL.geom3d.viewer.Camera

mouseMoved(MouseEvent) - Method in class ProGAL.geom3d.viewer.Camera

mousePressed(MouseEvent) - Method in class ProGAL.geom3d.viewer.Camera

mouseReleased(MouseEvent) - Method in class ProGAL.geom3d.viewer.Camera

mouseWheelMoved(MouseWheelEvent) - Method in class ProGAL.geom3d.viewer.Camera

multiply(double) - Method in class ProGAL.geom2d.Vector

multiply(double) - Method in class ProGAL.geom3d.Vector

Multiply this vector by s and return the result (without changing this object).

multiply(double) - Method in class ProGAL.geomNd.Vector

Multiply this vector by s and return the result (without changing this object).

multiply(Point) - Method in class ProGAL.math.Matrix

Apply this matrix to the point p and return the result (this will NOT change p).

multiply(Point) - Method in class ProGAL.math.Matrix

multiply(Vector) - Method in class ProGAL.math.Matrix

Apply this matrix to the vector v and return the result (without changing v).

multiply(Matrix) - Method in class ProGAL.math.Matrix

Multiply this matrix to another matrix and return the result.

multiply(double) - Method in class ProGAL.math.Matrix

Multiply the components of this matrix by a scalar.

multiply_Strassen(Matrix) - Method in class ProGAL.math.Matrix

multiplyIn(Vector) - Method in class ProGAL.math.Matrix

Apply this matrix to the vector v and return the result (this will change v).

multiplyIn(Point) - Method in class ProGAL.math.Matrix

Apply this matrix to the point p and return the result (this will change p).

multiplyThis(double) - Method in class ProGAL.geom2d.Vector

multiplyThis(double) - Method in class ProGAL.geom3d.Vector.ImmutableVector3d

multiplyThis(double) - Method in class ProGAL.geom3d.Vector

Multiply this vector by s and return the result (changing this object).

multiplyThis(double) - Method in class ProGAL.geomNd.Point

Scale this point by the specified value

multiplyThis(double) - Method in class ProGAL.geomNd.Vector

Multiply this vector by s and return the result (changing this object).

multiplyThis(Matrix) - Method in class ProGAL.math.Matrix.ImmutableMatrix

multiplyThis(double) - Method in class ProGAL.math.Matrix.ImmutableMatrix

multiplyThis(Matrix) - Method in class ProGAL.math.Matrix

Multiply this matrix to another matrix.

multiplyThis(double) - Method in class ProGAL.math.Matrix

Multiply the components of this matrix by a scalar.