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M
main(String[])
- Static method in class ProGAL.dataStructures.
DLCyclicList
main(String[])
- Static method in class ProGAL.dataStructures.
DLList
main(String[])
- Static method in class ProGAL.dataStructures.
Heap
main(String[])
- Static method in class ProGAL.dataStructures.rangeSearching.
Benchmark
main(String[])
- Static method in class ProGAL.dataStructures.rangeSearching.
GridMap
main(String[])
- Static method in class ProGAL.dataStructures.rangeSearching.
LinearRangeSearch
main(String[])
- Static method in class ProGAL.dataStructures.rangeSearching.rangeTree.
RangeTree
Test the range tree.
main(String[])
- Static method in class ProGAL.dataStructures.
Set
main(String[])
- Static method in class ProGAL.dataStructures.
SetIterator
main(String[])
- Static method in class ProGAL.dataStructures.
SorterQuick
main(String[])
- Static method in class ProGAL.dataStructures.viewer.
BinaryTreePainter
main(String[])
- Static method in class ProGAL.geom2d.
ApolloniusSolver
main(String[])
- Static method in class ProGAL.geom2d.
Circle
main(String[])
- Static method in class ProGAL.geom2d.convexHull.
DivideAndConquer
main(String[])
- Static method in class ProGAL.geom2d.convexHull.
GrahamScan
main(String[])
- Static method in class ProGAL.geom2d.
ConvexPolygon
main(String[])
- Static method in class ProGAL.geom2d.delaunay.
DTNoBigPoints
main(String[])
- Static method in class ProGAL.geom2d.delaunay.
DTWithBigPoints
main(String[])
- Static method in class ProGAL.geom2d.delaunay.
Kinetic
main(String[])
- Static method in class ProGAL.geom2d.
Point
main(String[])
- Static method in class ProGAL.geom2d.
Polygon
main(String[])
- Static method in class ProGAL.geom2d.
Triangle
main(String[])
- Static method in class ProGAL.geom2d.
Triangulation
main(String[])
- Static method in class ProGAL.geom2d.viewer.
J2DScene
main(String[])
- Static method in class ProGAL.geom3d.
ApolloniusSolver
main(String[])
- Static method in class ProGAL.geom3d.
Circle
main(String[])
- Static method in class ProGAL.geom3d.complex.alphaComplex.
AlphaComplex
main(String[])
- Static method in class ProGAL.geom3d.complex.alphaComplex.
EiffelPointList
main(String[])
- Static method in class ProGAL.geom3d.complex.alphaComplex.
Interval
main(String[])
- Static method in class ProGAL.geom3d.complex.alphaComplex.tests.
AlphaComplexDebugger
main(String[])
- Static method in class ProGAL.geom3d.complex.alphaComplex.tests.
BettiDebugger
main(String[])
- Static method in class ProGAL.geom3d.complex.alphaComplex.
VoidTree
main(String[])
- Static method in class ProGAL.geom3d.complex.delaunayComplex.
DelaunayComplexRotation
main(String[])
- Static method in class ProGAL.geom3d.complex.delaunayComplex.tests.
RegularComplexVisualTest
main(String[])
- Static method in class ProGAL.geom3d.complex.tessellation.
DelaunayTessellation
main(String[])
- Static method in class ProGAL.geom3d.
Plane
main(String[])
- Static method in class ProGAL.geom3d.
Point
main(String[])
- Static method in class ProGAL.geom3d.superposition.
GDT
main(String[])
- Static method in class ProGAL.geom3d.tess.
TESS
main(String[])
- Static method in class ProGAL.geom3d.tessellation.BowyerWatson.
RegularTessellation
main(String[])
- Static method in class ProGAL.geom3d.viewer.
J3DScene
main(String[])
- Static method in class ProGAL.geom3d.volumes.
Cylinder
main(String[])
- Static method in class ProGAL.geom3d.volumes.
Lens
main(String[])
- Static method in class ProGAL.geom3d.volumes.
Sphere
main(String[])
- Static method in class ProGAL.geom3d.volumes.
Tetrahedron
main(String[])
- Static method in class ProGAL.geomNd.
ApolloniusSolver
main(String[])
- Static method in class ProGAL.geomNd.complex.delaunayComplex.
BowyerWatson
main(String[])
- Static method in class ProGAL.math.
Trigonometry
main(String[])
- Static method in class ProGAL.proteins.belta.
PDBFile
main(String[])
- Static method in class ProGAL.proteins.beltaStructure.bnb.
BnBTreeExplorer
main(String[])
- Static method in class ProGAL.proteins.beltaStructure.bnb.
SegmentStructure
main(String[])
- Static method in class ProGAL.proteins.beltaStructure.bnb.
SheetStructure
main(String[])
- Static method in class ProGAL.proteins.beltaStructure.
CanonicalSheet
main(String[])
- Static method in class ProGAL.proteins.beltaStructure.loop.
CALoopStructure
main(String[])
- Static method in class ProGAL.proteins.beltaStructure.loop.
CoilDatabase
main(String[])
- Static method in class ProGAL.proteins.beltaStructure.sheet.
SheetAlignment
main(String[])
- Static method in class ProGAL.proteins.beltaStructure.sheetLoop.
SheetLoopGUI
main(String[])
- Static method in class ProGAL.proteins.chainTree.
ChainTree
main(String[])
- Static method in class ProGAL.proteins.dunbrack.
RamachandranDistribution
main(String[])
- Static method in class ProGAL.proteins.
PDBFile
main(String[])
- Static method in class ProGAL.proteins.
PDBWebReader
main(String[])
- Static method in class ProGAL.proteins.
ProteinComplex
main(String[])
- Static method in class ProGAL.proteins.viewer.
CoilSurface
main(String[])
- Static method in class ProGAL.proteins.viewer.
HelixSurface
main(String[])
- Static method in class ProGAL.proteins.viewer.
PDBFileViewer
main(String[])
- Static method in class ProGAL.proteins.viewer.
StrandSurface
makeSet(Object)
- Method in class ProGAL.dataStructures.
DisjointSet
makeSet(Object)
- Method in class ProGAL.geom3d.complex.alphaComplex.
DisjointSet
Create a new set containing the element o
matches(BetaTopology)
- Method in class ProGAL.proteins.belta.
BetaTopology
Determine if this beta-topology matches some other topology.
matches(SecondaryStructure)
- Method in class ProGAL.proteins.belta.
SecondaryStructure
Determine if this secondary structure matches ss.
Matrix
- Class in
ProGAL.math
Matrix(int, int)
- Constructor for class ProGAL.math.
Matrix
Construct an M by N matrix with zeros in all entries.
Matrix(double[][])
- Constructor for class ProGAL.math.
Matrix
Construct a matrix from an array-of-array-of-double.
Matrix(int, int, int)
- Constructor for class ProGAL.math.
Matrix
Matrix.EigenvalueDecomposition
- Class in
ProGAL.math
Eigenvalues and eigenvectors of a real matrix.
Matrix.ImmutableMatrix
- Class in
ProGAL.math
Matrix.ImmutableMatrix(double[][])
- Constructor for class ProGAL.math.
Matrix.ImmutableMatrix
Matrix3x3
- Class in
ProGAL.math
Matrix3x3()
- Constructor for class ProGAL.math.
Matrix3x3
Matrix3x3(double[][])
- Constructor for class ProGAL.math.
Matrix3x3
MatrixTest
- Class in
ProGAL.math.test
MatrixTest()
- Constructor for class ProGAL.math.test.
MatrixTest
midPoint(Point, Point)
- Static method in class ProGAL.geom2d.
Point
Returns the midpoint of two points.
midpoint()
- Method in class ProGAL.proteins.belta.
SecondaryStructure.SSSegment
minimumEnclosingCircle_bruteforce(List<Point>)
- Static method in class ProGAL.geom2d.
Circle
Deprecated.
minimumEnclosingCircle_Welzl(List<Point>)
- Static method in class ProGAL.geom2d.
Circle
minor(int, int)
- Method in class ProGAL.math.
Matrix
Return the minor, i.e.
mouseClicked(MouseEvent)
- Method in class ProGAL.geom3d.viewer.
Camera
mouseDragged(MouseEvent)
- Method in class ProGAL.geom3d.viewer.
Camera
mouseEntered(MouseEvent)
- Method in class ProGAL.geom3d.viewer.
Camera
mouseExited(MouseEvent)
- Method in class ProGAL.geom3d.viewer.
Camera
mouseMoved(MouseEvent)
- Method in class ProGAL.geom3d.viewer.
Camera
mousePressed(MouseEvent)
- Method in class ProGAL.geom3d.viewer.
Camera
mouseReleased(MouseEvent)
- Method in class ProGAL.geom3d.viewer.
Camera
mouseWheelMoved(MouseWheelEvent)
- Method in class ProGAL.geom3d.viewer.
Camera
multiply(double)
- Method in class ProGAL.geom2d.
Vector
multiply(double)
- Method in class ProGAL.geom3d.
Vector
Multiply this vector by s and return the result (without changing this object).
multiply(double)
- Method in class ProGAL.geomNd.
Vector
Multiply this vector by s and return the result (without changing this object).
multiply(Point)
- Method in class ProGAL.math.
Matrix
Apply this matrix to the point p and return the result (this will NOT change p).
multiply(Point)
- Method in class ProGAL.math.
Matrix
multiply(Vector)
- Method in class ProGAL.math.
Matrix
Apply this matrix to the vector v and return the result (without changing v).
multiply(Matrix)
- Method in class ProGAL.math.
Matrix
Multiply this matrix to another matrix and return the result.
multiply(double)
- Method in class ProGAL.math.
Matrix
Multiply the components of this matrix by a scalar.
multiply_Strassen(Matrix)
- Method in class ProGAL.math.
Matrix
multiplyIn(Vector)
- Method in class ProGAL.math.
Matrix
Apply this matrix to the vector v and return the result (this will change v).
multiplyIn(Point)
- Method in class ProGAL.math.
Matrix
Apply this matrix to the point p and return the result (this will change p).
multiplyThis(double)
- Method in class ProGAL.geom2d.
Vector
multiplyThis(double)
- Method in class ProGAL.geom3d.
Vector.ImmutableVector3d
multiplyThis(double)
- Method in class ProGAL.geom3d.
Vector
Multiply this vector by s and return the result (changing this object).
multiplyThis(double)
- Method in class ProGAL.geomNd.
Point
Scale this point by the specified value
multiplyThis(double)
- Method in class ProGAL.geomNd.
Vector
Multiply this vector by s and return the result (changing this object).
multiplyThis(Matrix)
- Method in class ProGAL.math.
Matrix.ImmutableMatrix
multiplyThis(double)
- Method in class ProGAL.math.
Matrix.ImmutableMatrix
multiplyThis(Matrix)
- Method in class ProGAL.math.
Matrix
Multiply this matrix to another matrix.
multiplyThis(double)
- Method in class ProGAL.math.
Matrix
Multiply the components of this matrix by a scalar.
Overview
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