ProGAL.proteins.beltaStructure.bnb
Class SegmentStructure

java.lang.Object
  ProGAL.proteins.beltaStructure.bnb.SegmentStructure

All Implemented Interfaces:

Branchable

public class SegmentStructure
extends java.lang.Object
implements Branchable

Field Summary

SecondaryStructure.SSSegment

seg

Constructor Summary

SegmentStructure(int dirs, int rots, SecondaryStructure ss, SecondaryStructure.SSSegment seg, AminoAcidChain chain)
Construct a segment structure for the specified segment with dirs directions, rots rotations

Method Summary

java.util.List<java.lang.Integer>	definedResidues()
int	getStructures() Return the number of structures in this segment.
static void	main(java.lang.String[] args)
void	setStructure(int s) Sets the structure of this segment.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

seg

public final SecondaryStructure.SSSegment seg

Constructor Detail

SegmentStructure

public SegmentStructure(int dirs,
                        int rots,
                        SecondaryStructure ss,
                        SecondaryStructure.SSSegment seg,
                        AminoAcidChain chain)

Construct a segment structure for the specified segment with dirs directions, rots rotations

Parameters:

dirs -

rots -

ss - Secondary structure of entire chain

seg - Segment to determine the structure of

chain - The entire amino acid chain. Kept because the setStructure updates the chain atoms within the bounds of the segment.

Method Detail

definedResidues

public java.util.List<java.lang.Integer> definedResidues()

Specified by:

definedResidues in interface Branchable

setStructure

public void setStructure(int s)

Sets the structure of this segment. If backward==false this method places all calphas and cbetas from (including) seg.start to (not including) seg.end. If backwards

Specified by:

setStructure in interface Branchable

getStructures

public int getStructures()

Return the number of structures in this segment. Typically the number of rotations times the number of directions.

Specified by:

getStructures in interface Branchable

main

public static void main(java.lang.String[] args)