Uses of Package
ProGAL.proteins.structure

Packages that use ProGAL.proteins.structure

ProGAL.proteins
ProGAL.proteins.beltaStructure.bnb
ProGAL.proteins.beltaStructure.loop
ProGAL.proteins.beltaStructure.sheet
ProGAL.proteins.beltaStructure.sheetLoop
ProGAL.proteins.structure
ProGAL.proteins.structure.generators

Classes in ProGAL.proteins.structure used by ProGAL.proteins

AminoAcidChain
A chain of amino acids.

Classes in ProGAL.proteins.structure used by ProGAL.proteins.beltaStructure.bnb

AminoAcidChain
A chain of amino acids.

Classes in ProGAL.proteins.structure used by ProGAL.proteins.beltaStructure.loop

AminoAcidChain
A chain of amino acids.

Atom
A class to represent the following properties of an atom: Position Van der waals radius covalent bonds name an id unique to this atom among all the atoms within the same amino acid a pointer to the residue that the atom belongs to The position is maintained in the super-class Point.

Classes in ProGAL.proteins.structure used by ProGAL.proteins.beltaStructure.sheet

AminoAcidChain
A chain of amino acids.

Classes in ProGAL.proteins.structure used by ProGAL.proteins.beltaStructure.sheetLoop

AminoAcidChain
A chain of amino acids.

Classes in ProGAL.proteins.structure used by ProGAL.proteins.structure

AminoAcid
An amino acid containing the following properties: Pointers to all atoms within this amino acid a pointer to the AminoAcidChain that contains this amino acid the type of the amino acid (Alanine, arginine etc.) an index specifying this amino acids placement in the aminoAcidChain().aminoAcids()-array (for convenience)

AminoAcidChain
A chain of amino acids.

Atom
A class to represent the following properties of an atom: Position Van der waals radius covalent bonds name an id unique to this atom among all the atoms within the same amino acid a pointer to the residue that the atom belongs to The position is maintained in the super-class Point.

CBond

Classes in ProGAL.proteins.structure used by ProGAL.proteins.structure.generators

AminoAcid
An amino acid containing the following properties: Pointers to all atoms within this amino acid a pointer to the AminoAcidChain that contains this amino acid the type of the amino acid (Alanine, arginine etc.) an index specifying this amino acids placement in the aminoAcidChain().aminoAcids()-array (for convenience)

Atom
A class to represent the following properties of an atom: Position Van der waals radius covalent bonds name an id unique to this atom among all the atoms within the same amino acid a pointer to the residue that the atom belongs to The position is maintained in the super-class Point.

CBond