Uses of Class
ProGAL.proteins.structure.AminoAcidChain

Packages that use AminoAcidChain

ProGAL.proteins
ProGAL.proteins.beltaStructure.bnb
ProGAL.proteins.beltaStructure.loop
ProGAL.proteins.beltaStructure.sheet
ProGAL.proteins.beltaStructure.sheetLoop
ProGAL.proteins.structure

Uses of AminoAcidChain in ProGAL.proteins

Methods in ProGAL.proteins that return AminoAcidChain

AminoAcidChain

PDBFile.getChain(int modelNum, int chainNum)

Uses of AminoAcidChain in ProGAL.proteins.beltaStructure.bnb

Methods in ProGAL.proteins.beltaStructure.bnb that return AminoAcidChain

AminoAcidChain

BnBSolver.getChain()

Constructors in ProGAL.proteins.beltaStructure.bnb with parameters of type AminoAcidChain

SegmentStructure(int dirs, int rots, SecondaryStructure ss, SecondaryStructure.SSSegment seg, AminoAcidChain chain)
Construct a segment structure for the specified segment with dirs directions, rots rotations

SheetStructure(int structures, SheetTopology st, AminoAcidChain chain)

Uses of AminoAcidChain in ProGAL.proteins.beltaStructure.loop

Methods in ProGAL.proteins.beltaStructure.loop with parameters of type AminoAcidChain

void	LoopStructure.updateAtoms(AminoAcidChain chain)
void	CALoopStructure.updateAtoms(AminoAcidChain chain)
void	CALoopStructure.SegmentStructure.updateAtoms(AminoAcidChain chain)

Uses of AminoAcidChain in ProGAL.proteins.beltaStructure.sheet

Methods in ProGAL.proteins.beltaStructure.sheet with parameters of type AminoAcidChain

void	SurfaceSheetStructure.updateAtoms(AminoAcidChain chain)

Uses of AminoAcidChain in ProGAL.proteins.beltaStructure.sheetLoop

Subclasses of AminoAcidChain in ProGAL.proteins.beltaStructure.sheetLoop

class

SheetLoopStructure

Methods in ProGAL.proteins.beltaStructure.sheetLoop with parameters of type AminoAcidChain

void	SheetLoopStructure.updateAtoms(AminoAcidChain chain)
void	PartialStructure.updateAtoms(AminoAcidChain chain)

Uses of AminoAcidChain in ProGAL.proteins.structure

Methods in ProGAL.proteins.structure that return AminoAcidChain

AminoAcidChain

AminoAcid.aminoAcidChain()