Package ProGAL.proteins.structure

Class Summary

AminoAcid	An amino acid containing the following properties: Pointers to all atoms within this amino acid a pointer to the AminoAcidChain that contains this amino acid the type of the amino acid (Alanine, arginine etc.) an index specifying this amino acids placement in the aminoAcidChain().aminoAcids()-array (for convenience)
AminoAcidChain	A chain of amino acids.
Atom	A class to represent the following properties of an atom: Position Van der waals radius covalent bonds name an id unique to this atom among all the atoms within the same amino acid a pointer to the residue that the atom belongs to The position is maintained in the super-class Point.
CBond