Uses of Class
ProGAL.proteins.belta.SecondaryStructure.SSSegment

Packages that use SecondaryStructure.SSSegment

ProGAL.proteins.belta
ProGAL.proteins.beltaStructure
ProGAL.proteins.beltaStructure.bnb
ProGAL.proteins.beltaStructure.loop
ProGAL.proteins.beltaStructure.sheet

Uses of SecondaryStructure.SSSegment in ProGAL.proteins.belta

Fields in ProGAL.proteins.belta declared as SecondaryStructure.SSSegment

SecondaryStructure.SSSegment[]

SecondaryStructure.segments Secondary structure segments (helix, coil or strand)

Methods in ProGAL.proteins.belta that return SecondaryStructure.SSSegment

SecondaryStructure.SSSegment[]	SecondaryStructure.getCoils() Return array containing all segments, s, where s.type==SSType.COIL.
SecondaryStructure.SSSegment[]	SecondaryStructure.getHelices() Return array containing all segments, s, where s.type==SSType.HELIX.
SecondaryStructure.SSSegment	SecondaryStructure.getSegmentContainingResidue(int res) TODO: Comment and test
SecondaryStructure.SSSegment[]	SecondaryStructure.getStrands() Return array containing all segments, s, where s.type==SSType.STRAND.

Methods in ProGAL.proteins.belta with parameters of type SecondaryStructure.SSSegment

boolean

SecondaryStructure.SSSegment.overlaps(SecondaryStructure.SSSegment seg)

Uses of SecondaryStructure.SSSegment in ProGAL.proteins.beltaStructure

Fields in ProGAL.proteins.beltaStructure declared as SecondaryStructure.SSSegment

SecondaryStructure.SSSegment	ChainTreeLoop.segment1
SecondaryStructure.SSSegment	ChainTreeLoop.segment2

Uses of SecondaryStructure.SSSegment in ProGAL.proteins.beltaStructure.bnb

Fields in ProGAL.proteins.beltaStructure.bnb declared as SecondaryStructure.SSSegment

SecondaryStructure.SSSegment

SegmentStructure.seg

Constructors in ProGAL.proteins.beltaStructure.bnb with parameters of type SecondaryStructure.SSSegment

SegmentStructure(int dirs, int rots, SecondaryStructure ss, SecondaryStructure.SSSegment seg, AminoAcidChain chain)
Construct a segment structure for the specified segment with dirs directions, rots rotations

Uses of SecondaryStructure.SSSegment in ProGAL.proteins.beltaStructure.loop

Fields in ProGAL.proteins.beltaStructure.loop declared as SecondaryStructure.SSSegment

SecondaryStructure.SSSegment	LoopStructure.segment1
SecondaryStructure.SSSegment	CALoopStructure.segment1
SecondaryStructure.SSSegment	LoopStructure.segment2
SecondaryStructure.SSSegment	CALoopStructure.segment2

Uses of SecondaryStructure.SSSegment in ProGAL.proteins.beltaStructure.sheet

Methods in ProGAL.proteins.beltaStructure.sheet with parameters of type SecondaryStructure.SSSegment

Matrix

SurfaceSheetStructure.getLoopTransform(SecondaryStructure.SSSegment seg) TODO