ProGAL.proteins.beltaStructure
Class ChainTreeLoop

java.lang.Object
  ProGAL.proteins.beltaStructure.ChainTreeLoop

public class ChainTreeLoop
extends java.lang.Object

Field Summary

SecondaryStructure	secondaryStructure
SecondaryStructure.SSSegment	segment1
SecondaryStructure.SSSegment	segment2

Constructor Summary

ChainTreeLoop(SecondaryStructure ss, int seg1, int seg2)

Method Summary

void	enforceClosureAnalytically()
void	enforceClosureCCD()
void	enforceClosureJacobian()
boolean	isClosed()
void	rebuildACO()
void	rebuildAnalytically()
void	rebuildCCD()
void	rebuildJacobian()
void	setOmega(int res, double newValue)
void	setPhi(int res, double newValue)
void	setPsi(int res, double newValue)
void	setTorsion(int res, int torsion, double newValue)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

secondaryStructure

public final SecondaryStructure secondaryStructure

segment1

public final SecondaryStructure.SSSegment segment1

segment2

public final SecondaryStructure.SSSegment segment2

Constructor Detail

ChainTreeLoop

public ChainTreeLoop(SecondaryStructure ss,
                     int seg1,
                     int seg2)

Method Detail

isClosed

public boolean isClosed()

setPsi

public void setPsi(int res,
                   double newValue)

setPhi

public void setPhi(int res,
                   double newValue)

setOmega

public void setOmega(int res,
                     double newValue)

setTorsion

public void setTorsion(int res,
                       int torsion,
                       double newValue)

enforceClosureCCD

public void enforceClosureCCD()

enforceClosureAnalytically

public void enforceClosureAnalytically()

enforceClosureJacobian

public void enforceClosureJacobian()

rebuildCCD

public void rebuildCCD()

rebuildAnalytically

public void rebuildAnalytically()

rebuildJacobian

public void rebuildJacobian()

rebuildACO

public void rebuildACO()