Uses of Package
ProGAL.proteins.belta

Packages that use ProGAL.proteins.belta

ProGAL.proteins.belta
ProGAL.proteins.beltaStructure
ProGAL.proteins.beltaStructure.bnb
ProGAL.proteins.beltaStructure.loop
ProGAL.proteins.beltaStructure.sheet
ProGAL.proteins.beltaStructure.sheetLoop
ProGAL.proteins.chainTree
ProGAL.proteins.viewer

Classes in ProGAL.proteins.belta used by ProGAL.proteins.belta

BetaTopology
Representation of a beta-topology.

PrimaryStructure

SecondaryStructure
Representation of a secondary structure assignment.

SecondaryStructure.SSSegment
A secondary structure segment of either helix, coil or strand.

SheetTopology
Representation of the topology of a single sheet.

SheetTopology.StrandPair
A pair of strands specified by two strand-indices (i.e.

SSType
Types of secondary structure

Classes in ProGAL.proteins.belta used by ProGAL.proteins.beltaStructure

SecondaryStructure
Representation of a secondary structure assignment.

SecondaryStructure.SSSegment
A secondary structure segment of either helix, coil or strand.

SheetTopology
Representation of the topology of a single sheet.

Classes in ProGAL.proteins.belta used by ProGAL.proteins.beltaStructure.bnb

BetaTopology
Representation of a beta-topology.

SecondaryStructure
Representation of a secondary structure assignment.

SecondaryStructure.SSSegment
A secondary structure segment of either helix, coil or strand.

SheetTopology
Representation of the topology of a single sheet.

Classes in ProGAL.proteins.belta used by ProGAL.proteins.beltaStructure.loop

SecondaryStructure
Representation of a secondary structure assignment.

SecondaryStructure.SSSegment
A secondary structure segment of either helix, coil or strand.

Classes in ProGAL.proteins.belta used by ProGAL.proteins.beltaStructure.sheet

PDBFile
Quick note: One important feature of this extension of the normal PDBFile is that all indices are shifted so they are consecutive, which is required for betatopologies and secondary structures to make sense and not crash.

SecondaryStructure.SSSegment
A secondary structure segment of either helix, coil or strand.

SheetTopology
Representation of the topology of a single sheet.

Classes in ProGAL.proteins.belta used by ProGAL.proteins.beltaStructure.sheetLoop

BetaTopology
Representation of a beta-topology.

PrimaryStructure

SecondaryStructure
Representation of a secondary structure assignment.

Classes in ProGAL.proteins.belta used by ProGAL.proteins.chainTree

PrimaryStructure

Classes in ProGAL.proteins.belta used by ProGAL.proteins.viewer

PDBFile
Quick note: One important feature of this extension of the normal PDBFile is that all indices are shifted so they are consecutive, which is required for betatopologies and secondary structures to make sense and not crash.