Uses of Interface
ProGAL.geom3d.Simplex

Packages that use Simplex

ProGAL.geom3d	This package contains classes that are all related to three-dimensional geometric concepts.
ProGAL.geom3d.complex	A simplicial complex is a topological space of a particular kind, constructed by "gluing together" points, line segments, triangles, and their n-dimensional counterparts.
ProGAL.geom3d.complex.alphaComplex	An alpha complex for a set of d-dimensional points and a real number alpha is a subset of the Delaunay complex where all simplices that can be enclosed by an alpha-probe (a hypersphere of radius alpha), without the probe enclosing any points, are removed.
ProGAL.geom3d.tessellation.BowyerWatson
ProGAL.geom3d.volumes
ProGAL.proteins.structure

Uses of Simplex in ProGAL.geom3d

Classes in ProGAL.geom3d that implement Simplex

class	LineSegment A line segment spanned by two points, a and b.
class	Point A point in (x,y,z)-space represented with double precision.
class	PointWeighted
class	Triangle A triangle in (x,y,z)-space represented by the three corner-points.

Uses of Simplex in ProGAL.geom3d.complex

Classes in ProGAL.geom3d.complex that implement Simplex

class	CEdge
class	CTetrahedron An extension of the normal Tetrahedron that is used in complexes.
class	CTriangle
class	CVertex

Uses of Simplex in ProGAL.geom3d.complex.alphaComplex

Methods in ProGAL.geom3d.complex.alphaComplex that return types with arguments of type Simplex

java.util.List<Simplex>	AlphaComplex.getAllSimplices()
java.util.List<Simplex>	AlphaFiltration.getSimplices()
java.util.List<Simplex>	AlphaComplex.getSimplices()
java.util.List<Simplex>	AlphaFiltration.getSimplices(double alpha) Get a list of simplices that are part of the alpha-complex with the specified probe radius.

Methods in ProGAL.geom3d.complex.alphaComplex with parameters of type Simplex

boolean	AlphaFiltration.getAttached(Simplex s)
int	AlphaComplex.getDepth(Simplex s) Return the depth of simplex from the surface of the alpha complex.
int	AlphaFiltration.getDim(Simplex s)
double	AlphaFiltration.getInAlpha(Simplex s) Return the probe-radius at which the simplex s enters the alpha complex.
boolean	AlphaFiltration.getOnCH(Simplex s) Return true iff the simplex is on the convex hull.

Uses of Simplex in ProGAL.geom3d.tessellation.BowyerWatson

Classes in ProGAL.geom3d.tessellation.BowyerWatson that implement Simplex

class

Tetr

Uses of Simplex in ProGAL.geom3d.volumes

Classes in ProGAL.geom3d.volumes that implement Simplex

class

Tetrahedron A tetrahedron is a polyhedron with four triangular faces.

Uses of Simplex in ProGAL.proteins.structure

Classes in ProGAL.proteins.structure that implement Simplex

class

Atom A class to represent the following properties of an atom: Position Van der waals radius covalent bonds name an id unique to this atom among all the atoms within the same amino acid a pointer to the residue that the atom belongs to The position is maintained in the super-class Point.