Uses of Class
ProGAL.geom3d.viewer.J3DScene

Packages that use J3DScene

ProGAL.geom3d	This package contains classes that are all related to three-dimensional geometric concepts.
ProGAL.geom3d.complex	A simplicial complex is a topological space of a particular kind, constructed by "gluing together" points, line segments, triangles, and their n-dimensional counterparts.
ProGAL.geom3d.complex.alphaComplex	An alpha complex for a set of d-dimensional points and a real number alpha is a subset of the Delaunay complex where all simplices that can be enclosed by an alpha-probe (a hypersphere of radius alpha), without the probe enclosing any points, are removed.
ProGAL.geom3d.complex.delaunayComplex	A Delaunay complex for a set of d-dimensional points is a tesselation of the points such that no point is inside the circumscribing hypersphere of the d-simplices (for the 3D case: Tetrahedra).
ProGAL.geom3d.viewer	All classes required for the 3D scene viewer J3DScene.
ProGAL.geom3d.volumes
ProGAL.proteins.viewer

Uses of J3DScene in ProGAL.geom3d

Methods in ProGAL.geom3d with parameters of type J3DScene

java.lang.Double	Circle.getFirstIntersection(Line line, Point p, Vector dir, J3DScene scene) returns the smallest rotation angle (direction determined by vector dir) needed to bring point p on this circle to be on the line l as well.
java.lang.Double	Plane.getIntersectionAngle(Circle circle, Point p, Vector dir, J3DScene scene)
Tetrahedron	Triangle.toScene(J3DScene scene, java.awt.Color clr)
void	Vector.toScene(J3DScene scene, java.awt.Color clr, double width)
void	Plane.toScene(J3DScene scene, java.awt.Color clr, int size)
void	Point.toScene(J3DScene scene, double r, java.awt.Color clr)
void	LineSegment.toScene(J3DScene scene, double r, java.awt.Color clr)
void	Line.toScene(J3DScene scene, double rad, java.awt.Color clr)
void	Circle.toScene(J3DScene scene, double width, int res)

Uses of J3DScene in ProGAL.geom3d.complex

Methods in ProGAL.geom3d.complex with parameters of type J3DScene

Tetrahedron	CTriangle.toScene(J3DScene scene, java.awt.Color clr)
void	CTriangle.toScene(J3DScene scene, double rad, java.awt.Color clr)
void	CTetrahedron.toScene(J3DScene scene, double rad, java.awt.Color clr)

Uses of J3DScene in ProGAL.geom3d.complex.alphaComplex

Methods in ProGAL.geom3d.complex.alphaComplex with parameters of type J3DScene

void	AlphaComplex.getAllCavities(java.util.ArrayList<CTetrahedron> tetras, int lowerBound, J3DScene scene)
void	AlphaComplex.getAllCavityPaths(java.util.ArrayList<CTetrahedron> tetras, J3DScene scene)
void	AlphaComplex.getCavity(CTetrahedron t, int lowerBound, J3DScene scene)
void	AlphaComplex.getCavityPath(CTetrahedron deep, J3DScene scene)
void	AlphaComplex.getVoids(J3DScene scene)

Uses of J3DScene in ProGAL.geom3d.complex.delaunayComplex

Methods in ProGAL.geom3d.complex.delaunayComplex with parameters of type J3DScene

void	DelaunayComplexRotation.drawScene(J3DScene scene, CVertex v, Circle circle)

Uses of J3DScene in ProGAL.geom3d.viewer

Methods in ProGAL.geom3d.viewer that return J3DScene

static J3DScene

J3DScene.createJ3DSceneInFrame() Create a frame containing a canvas, display it and return the J3DScene object shown in the frame.

Uses of J3DScene in ProGAL.geom3d.volumes

Methods in ProGAL.geom3d.volumes with parameters of type J3DScene

void	Tetrahedron.toScene(J3DScene scene)
void	Sphere.toScene(J3DScene scene, java.awt.Color clr)

Uses of J3DScene in ProGAL.proteins.viewer

Fields in ProGAL.proteins.viewer declared as J3DScene

J3DScene

PDBFileViewer.scene