A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

E

EdgeAlphaProperties - Class in ProGAL.geom3d.complex.alphaComplex

EdgeAlphaProperties(Interval, Interval, Interval, boolean, double) - Constructor for class ProGAL.geom3d.complex.alphaComplex.EdgeAlphaProperties

EdgeAlphaProperties(double, double, double, boolean, boolean) - Constructor for class ProGAL.geom3d.complex.alphaComplex.EdgeAlphaProperties

edgecircumradius(LineSegment) - Method in class ProGAL.geom3d.predicates.ExactJavaPredicates

TODO: This isnt exact

edgecircumradius(LineSegment) - Method in class ProGAL.geom3d.predicates.ExactNativePredicates

TODO: This isnt exact

edgecircumradius(LineSegment) - Method in class ProGAL.geom3d.predicates.InexactJavaPredicates

edgecircumradius(LineSegment) - Method in class ProGAL.geom3d.predicates.InexactRegularJavaPredicates

edgecircumradius(LineSegment) - Method in class ProGAL.geom3d.predicates.Predicates

edgeinsphere(LineSegment, Point) - Method in class ProGAL.geom3d.predicates.ExactJavaPredicates

TODO: This isnt exact

edgeinsphere(LineSegment, Point) - Method in class ProGAL.geom3d.predicates.ExactNativePredicates

TODO: This isnt exact

edgeinsphere(LineSegment, Point) - Method in class ProGAL.geom3d.predicates.InexactJavaPredicates

edgeinsphere(LineSegment, Point) - Method in class ProGAL.geom3d.predicates.InexactRegularJavaPredicates

edgeinsphere(LineSegment, Point) - Method in class ProGAL.geom3d.predicates.Predicates

EiffelPointList - Class in ProGAL.geom3d.complex.alphaComplex

EiffelPointList() - Constructor for class ProGAL.geom3d.complex.alphaComplex.EiffelPointList

element - Variable in class ProGAL.proteins.PDBFile.AtomRecord

The atom element.

element() - Method in class ProGAL.proteins.structure.Atom

end - Variable in class ProGAL.proteins.belta.SecondaryStructure.SSSegment

The residue-index of the last amino acid in this segment PLUS ONE.

endChainID - Variable in class ProGAL.proteins.PDBFile.HelixRecord

endChainID - Variable in class ProGAL.proteins.PDBFile.SheetRecord

endSeqNum - Variable in class ProGAL.proteins.PDBFile.HelixRecord

endSeqNum - Variable in class ProGAL.proteins.PDBFile.SheetRecord

enforceClosureAnalytically() - Method in class ProGAL.proteins.beltaStructure.ChainTreeLoop

enforceClosureAnalytically() - Method in class ProGAL.proteins.beltaStructure.loop.LoopStructure

enforceClosureCCD() - Method in class ProGAL.proteins.beltaStructure.ChainTreeLoop

enforceClosureCCD() - Method in class ProGAL.proteins.beltaStructure.loop.LoopStructure

enforceClosureJacobian() - Method in class ProGAL.proteins.beltaStructure.ChainTreeLoop

enforceClosureJacobian() - Method in class ProGAL.proteins.beltaStructure.loop.LoopStructure

enteringAngle(Point, Circle, boolean) - Method in class ProGAL.geom2d.Circle

enteringAngle(Point, Line, boolean) - Method in class ProGAL.geom2d.Circle

EPSILON - Static variable in class ProGAL.math.Constants

EPSILONBD - Static variable in class ProGAL.math.Constants

equals(Object) - Method in class ProGAL.geom2d.Point

Return true iff o is a Point that has the same same coordinates as this.

equals(Point) - Method in class ProGAL.geom2d.Point

Return true iff p has the same same coordinates as this.

equals(Object) - Method in class ProGAL.geom3d.complex.CEdge

equals(Object) - Method in class ProGAL.geom3d.complex.CTriangle

equals(Object) - Method in class ProGAL.geom3d.LineSegment

Returns true iff the argument is a line-segment and equals this.

equals(LineSegment) - Method in class ProGAL.geom3d.LineSegment

Returns true iff this line-segment and ls are the same.

equals(Object) - Method in class ProGAL.geom3d.Point

Returns true iff o is a point that equals this point.

equals(Point) - Method in class ProGAL.geom3d.Point

Returns true iff this point and point p are overlapping.

equals(Vector) - Method in class ProGAL.geomNd.Vector

Return true if this vector equals v.

equals(Object) - Method in class ProGAL.geomNd.Vector

equals(Matrix) - Method in class ProGAL.math.Matrix

equals(Object) - Method in class ProGAL.math.Matrix

equivalenceClass(E) - Method in class ProGAL.geom3d.complex.alphaComplex.UnionFind

Returns the equivalence class that element e is part of, as an unmodifiable set containing all elements from that class (including e).

err1 - Static variable in interface ProGAL.dataStructures.SortTool

ExactJavaPredicates - Class in ProGAL.geom3d.predicates

ExactJavaPredicates() - Constructor for class ProGAL.geom3d.predicates.ExactJavaPredicates

ExactJavaPredicatesTest - Class in ProGAL.geom3d.predicates.tests

ExactJavaPredicatesTest() - Constructor for class ProGAL.geom3d.predicates.tests.ExactJavaPredicatesTest

ExactNativePredicates - Class in ProGAL.geom3d.predicates

ExactNativePredicates() - Constructor for class ProGAL.geom3d.predicates.ExactNativePredicates

exitingAngle(Point, Circle, boolean) - Method in class ProGAL.geom2d.Circle

expand() - Method in class ProGAL.math.Matrix

extends to the smallest power of 2 square matrix by adding appropriate zero rows and columns

extend() - Method in class ProGAL.math.Matrix

extends to the smallest square matrix by adding appropriate zero rows or columns

extents - Variable in class ProGAL.geom3d.volumes.OBB

extract() - Method in class ProGAL.dataStructures.Heap

Return and remove least element, or null if empty