ProGAL javadoc

Packages

ProGAL	ProGAL is a library containing geometric datastructures and algorithms with special emphasis on supporting representation and analysis of protein structures.
ProGAL.dataStructures
ProGAL.dataStructures.rangeSearching
ProGAL.dataStructures.rangeSearching.rangeTree
ProGAL.dataStructures.viewer
ProGAL.geom2d	This package contains classes that are all related to two-dimensional geometric concepts.
ProGAL.geom2d.convexHull
ProGAL.geom2d.delaunay
ProGAL.geom2d.viewer	All classes required for the 2D scene viewer J2DScene.
ProGAL.geom3d	This package contains classes that are all related to three-dimensional geometric concepts.
ProGAL.geom3d.complex	A simplicial complex is a topological space of a particular kind, constructed by "gluing together" points, line segments, triangles, and their n-dimensional counterparts.
ProGAL.geom3d.complex.alphaComplex	An alpha complex for a set of d-dimensional points and a real number alpha is a subset of the Delaunay complex where all simplices that can be enclosed by an alpha-probe (a hypersphere of radius alpha), without the probe enclosing any points, are removed.
ProGAL.geom3d.complex.alphaComplex.tests
ProGAL.geom3d.complex.delaunayComplex	A Delaunay complex for a set of d-dimensional points is a tesselation of the points such that no point is inside the circumscribing hypersphere of the d-simplices (for the 3D case: Tetrahedra).
ProGAL.geom3d.complex.delaunayComplex.tests
ProGAL.geom3d.complex.tessellation
ProGAL.geom3d.predicates
ProGAL.geom3d.predicates.tests
ProGAL.geom3d.superposition
ProGAL.geom3d.superposition.tests
ProGAL.geom3d.surface
ProGAL.geom3d.tess
ProGAL.geom3d.tessellation.BowyerWatson
ProGAL.geom3d.tests
ProGAL.geom3d.viewer	All classes required for the 3D scene viewer J3DScene.
ProGAL.geom3d.volumes
ProGAL.geom3d.volumes.tests
ProGAL.geomNd	This package contains classes that are all related to Euclidean geometric concepts of dimension larger than three.
ProGAL.geomNd.complex
ProGAL.geomNd.complex.delaunayComplex
ProGAL.geomNd.complex.delaunayComplex.tests
ProGAL.geomNd.tests
ProGAL.io	A set of classes containing static methods for input and output (both to/from file system and from web).
ProGAL.math	This package contains math-classes that are not necessarily related to geometrical concepts.
ProGAL.math.test
ProGAL.proteins
ProGAL.proteins.belta
ProGAL.proteins.belta.tests
ProGAL.proteins.beltaStructure
ProGAL.proteins.beltaStructure.bnb
ProGAL.proteins.beltaStructure.bnb.lowerBounds
ProGAL.proteins.beltaStructure.loop
ProGAL.proteins.beltaStructure.sheet
ProGAL.proteins.beltaStructure.sheetLoop
ProGAL.proteins.chainTree
ProGAL.proteins.dunbrack
ProGAL.proteins.structure
ProGAL.proteins.structure.generators
ProGAL.proteins.viewer
ProGAL.statistics
ProGAL.statistics.tests