Serialized Form
Package ProGAL.dataStructures.viewer |
serialVersionUID: 1L
root
BinaryTreePainter.PNode root
pp
ProGAL.dataStructures.viewer.BinaryTreePainter.PaintPane pp
serialVersionUID: 1L
serialVersionUID: 8095991200265432551L
serialVersionUID: 1L
serialVersionUID: 1L
id
int id
face
TriangulationFace face
orbit
Circle orbit
polarAngle
double polarAngle
cosAngle
double cosAngle
sinAngle
double sinAngle
polarRadius
double polarRadius
squaredPolarRadius
double squaredPolarRadius
type
TriangulationVertex.VertexType type
Package ProGAL.geom2d.delaunay |
serialVersionUID: 1L
id
int id
first
Triangle first
last
Triangle last
serialVersionUID: -2120468832687547475L
serialVersionUID: -4824374877674925546L
serialVersionUID: 1L
w
double w
Package ProGAL.geom3d.complex |
serialVersionUID: 1L
degenerate
boolean degenerate
degCase
CVertex.DegenerateCase degCase
degPointOpposite
CVertex degPointOpposite
degPointA
CVertex degPointA
degPointB
CVertex degPointB
bigPoint
boolean bigPoint
adjacentEdges
java.util.List<E> adjacentEdges
Package ProGAL.geom3d.complex.alphaComplex |
serialVersionUID: 1L
points
Point[] points
serialVersionUID: -9141049716473285037L
elmap
java.util.Map<K,V> elmap
serialVersionUID: -6776647998875885511L
coords
double[] coords
- The double-array that holds the value of this point
dim
int dim
- The dimension of this point.
serialVersionUID: -2860146038113339241L
dim
int dim
Package ProGAL.geomNd.complex |
serialVersionUID: 1L
degenerate
boolean degenerate
bigPoint
boolean bigPoint
serialVersionUID: 1L
LU
double[][] LU
- Array for internal storage of decomposition.
- internal array storage.
m
int m
- Row and column dimensions, and pivot sign.
- column dimension.
n
int n
- Row and column dimensions, and pivot sign.
- column dimension.
pivsign
int pivsign
- Row and column dimensions, and pivot sign.
- column dimension.
piv
int[] piv
- Internal storage of pivot vector.
- pivot vector.
serialVersionUID: 1791445213018199901L
includeHydrogens
boolean includeHydrogens
includeHetAtms
boolean includeHetAtms
standardModel
int standardModel
standardChain
int standardChain
records
java.util.List<E> records
models
java.util.List<E> models
name
java.lang.String name
- The name of this PDB-file. Typically the PDB-id.
Package ProGAL.proteins.belta |
serialVersionUID: -8750143450211694975L
helixRecords
java.util.List<E> helixRecords
sheetRecords
java.util.List<E> sheetRecords
shiftMap
java.util.Map<K,V> shiftMap
Package ProGAL.proteins.structure |
serialVersionUID: -6262882698432071090L
radius
double radius
element
char element
name
java.lang.String name
id
int id
covalentBonds
CBond[] covalentBonds
aminoAcid
AminoAcid aminoAcid
index
int index