Uses of Class
ProGAL.proteins.PDBFile

Packages that use PDBFile

ProGAL.proteins
ProGAL.proteins.belta
ProGAL.proteins.beltaStructure

Uses of PDBFile in ProGAL.proteins

Fields in ProGAL.proteins declared as PDBFile

PDBFile

ProteinComplex.pdbFile

Methods in ProGAL.proteins that return PDBFile

static PDBFile

PDBFile.downloadPDBFile(java.lang.String pdbId) Read a PDB-file from www.pdb.org.

Methods in ProGAL.proteins with parameters of type PDBFile

double

PDBFile.superposeOnto(PDBFile f)

Constructors in ProGAL.proteins with parameters of type PDBFile

ProteinComplex(PDBFile f)

ProteinComplex(PDBFile f, double waterRad)

Uses of PDBFile in ProGAL.proteins.belta

Subclasses of PDBFile in ProGAL.proteins.belta

class

PDBFile Quick note: One important feature of this extension of the normal PDBFile is that all indices are shifted so they are consecutive, which is required for betatopologies and secondary structures to make sense and not crash.

Uses of PDBFile in ProGAL.proteins.beltaStructure

Methods in ProGAL.proteins.beltaStructure with parameters of type PDBFile

static CanonicalSheet

CanonicalSheet.createFromPDB(PDBFile pdbFile, SheetTopology st)