Uses of Class
ProGAL.geom3d.Vector

Packages that use Vector

ProGAL.geom3d	This package contains classes that are all related to three-dimensional geometric concepts.
ProGAL.geom3d.superposition
ProGAL.geom3d.surface
ProGAL.geom3d.viewer	All classes required for the 3D scene viewer J3DScene.
ProGAL.geom3d.volumes
ProGAL.math	This package contains math-classes that are not necessarily related to geometrical concepts.
ProGAL.proteins.beltaStructure
ProGAL.proteins.beltaStructure.sheet
ProGAL.proteins.viewer

Uses of Vector in ProGAL.geom3d

Subclasses of Vector in ProGAL.geom3d

static class

Vector.ImmutableVector3d A wrapper class for Vector3d which makes the vector immutable.

Fields in ProGAL.geom3d declared as Vector

Vector[]	Rectangle.bases
Vector	ParametricPlane.n
Vector	ParametricPlane.v1
Vector	ParametricPlane.v2
static Vector	Vector.X An immutable vector pointing in the (1,0,0)-direction.
static Vector	Vector.Y An immutable vector pointing in the (0,1,0)-direction.
static Vector	Vector.Z An immutable vector pointing in the (0,0,1)-direction.

Methods in ProGAL.geom3d that return Vector

Vector	Vector.add(Point p) Add p to this vector and return the result (without changing this object).
Vector	Vector.add(Vector v) Add v to this vector and return the result (without changing this object).
Vector	Vector.addThis(Point p) Add p to this vector and return the result (changing this object).
Vector	Vector.addThis(Vector v) Add v to this vector and return the result (changing this object).
Vector	Vector.ImmutableVector3d.addThis(Vector v)
Vector	Vector.clone() Create a clone of this vector.
Vector	Vector.cross(Vector v) Get the cross-product of this vector and v (without changing this object).
Vector	Vector.crossThis(Vector v) Get the cross-product of this vector and v and store the result in this vector (changes this object).
Vector	Vector.ImmutableVector3d.crossThis(Vector v)
Vector	Vector.divide(double s) Divide this vector by s and return the result (without changing this object).
Vector	Vector.divideThis(double s) Divide this vector by s and return the result (changing this object).
Vector	LineSegment.getAToB() Get the direction of the segment.
Vector	Line.getDir() Returns the direction vector defining this line.
Vector	Triangle.getNormal() Return a vector that is normal to this triangle.
Vector	Plane.getNormal() Return the normal defining this plane.
Vector	Circle.getNormal()
Vector	Circle.getNormalVector() Get the normal of the circle.
Vector	Vector.getOrthonormal() Get a vector (one of many possible) orthonormal to vector v.
Vector	Vector.multiply(double s) Multiply this vector by s and return the result (without changing this object).
Vector	Vector.multiplyThis(double s) Multiply this vector by s and return the result (changing this object).
Vector	Vector.ImmutableVector3d.multiplyThis(double s)
Vector	Vector.normalize() Normalize this vector and return the result (without changing this object).
Vector	Vector.normalizeFast()
Vector	Vector.normalizeThis() Normalize this vector and return the result (changing this object).
Vector	Vector.ImmutableVector3d.normalizeThis()
Vector	Vector.normalizeThisFast()
Vector	Vector.rotateIn(Vector v, double angle) Perform a right-handed rotation of v around this vector.
Vector	Vector.scaleToLength(double length) Scale this vector to a certain length (returns new object and does not change this object).
Vector	Vector.scaleToLengthThis(double length) Scale this vector to a certain length (changes this object).
Vector	Vector.ImmutableVector3d.scaleToLengthThis(double length)
Vector	Vector.subtract(Vector v) Subtract v from this vector and return the result (without changing this object).
Vector	Vector.subtractThis(Vector v) Subract v from this vector and return the result (changing this object).
Vector	Point.toVector() Returns the vector from origo to this point.
Vector	Point.vectorTo(Point p) Get the vector that points from this point to p

Methods in ProGAL.geom3d with parameters of type Vector

Vector	Vector.add(Vector v) Add v to this vector and return the result (without changing this object).
Point	Point.add(Vector p) Returns p added to this (without changing this object).
Vector	Vector.addThis(Vector v) Add v to this vector and return the result (changing this object).
Vector	Vector.ImmutableVector3d.addThis(Vector v)
Point	Point.addThis(Vector p) Returns p added to this (changing this object).
double	Vector.angle(Vector v) Get the angle between this vector and v.
Vector	Vector.cross(Vector v) Get the cross-product of this vector and v (without changing this object).
Vector	Vector.crossThis(Vector v) Get the cross-product of this vector and v and store the result in this vector (changes this object).
Vector	Vector.ImmutableVector3d.crossThis(Vector v)
double	Vector.dot(Vector v) Get the dot-product of this vector and v.
double	Point.dot(Vector v)
static double	Vector.getAngle(Vector u, Vector v) Get the angle between vector u and v.
static double	Vector.getCosDihedralAngle(Vector u, Vector v, Vector w)
static double	Vector.getDihedralAngle(Vector b1, Vector b2, Vector b3) Get the dihedral angle between 3 non-colinear vectors b1, b2, b3.
Point	PointList.getExtreme(Vector direction) Get the most extreme point in the direction specified by the vector.
int	PointList.getExtremeIndex(Vector direction) Get the most extreme point in the direction specified by the vector.
java.lang.Double	Circle.getFirstIntersection(Circle c, Point p, Vector dir) returns the smallest rotation angle (direction determined by vector dir) needed to bring point p on this circle to be on the circle c as well.
java.lang.Double	Circle.getFirstIntersection(Line line, Point p, Vector dir, J3DScene scene) returns the smallest rotation angle (direction determined by vector dir) needed to bring point p on this circle to be on the line l as well.
Point[]	Plane.getIntersection(Circle circle, Vector u)
Point	Triangle.getIntersection(Point p, Vector dir)
java.lang.Double	Plane.getIntersectionAngle(Circle circle, Point p, Vector dir, J3DScene scene)
boolean	Vector.isParallel(Vector v)
boolean	Vector.isSteinerAngle(Vector v)
Vector	Vector.rotateIn(Vector v, double angle) Perform a right-handed rotation of v around this vector.
void	Point.rotation(Vector v, double alpha) rotates (clockwise) the point around the line through the origo with the direction unit vector v.
void	Point.rotation(Vector v, double alpha, Point p) rotates (clockwise) the point around the line through the point p with the direction unit vector v.
void	Vector.set(Vector v) Set all coordinates of this vector equal to those of v
void	Plane.setNormal(Vector n) Set the normal to n.
Vector	Vector.subtract(Vector v) Subtract v from this vector and return the result (without changing this object).
Point	Point.subtract(Vector p) Returns p subtracted from this (without changing this object).
Vector	Vector.subtractThis(Vector v) Subract v from this vector and return the result (changing this object).
Point	Point.subtractThis(Vector p) Returns p subtracted from this (changing this object).

Constructors in ProGAL.geom3d with parameters of type Vector

Circle(Point center, double radius, Vector normal)

Circle(Point center, Point through, Vector normal)
A circle with given center through a given point and with specified normal vector

Line(Point p, Vector d)
Constructs a line through p with direction d.

Line(Vector d)
Constructs a line through origo with direction d.

LineSegment(Point a, Vector v)
Constructs a segment from a to a+v.

ParametricPlane(Point p, Vector normal)
Construct a parametric plane with the specified point and normal.

ParametricPlane(Point p, Vector v1, Vector v2)
8 + 31 = 39HOps

Plane(Point p, Vector n)
Constructs a plane with the normal vector n containing point p.

Plane(Vector n)
Constructs a plane with the normal vector n containing the point (0,0,0).

Point(Vector v)
Construct a point at the coordinates of v.

Rectangle(Point center, Vector[] bases)

Uses of Vector in ProGAL.geom3d.superposition

Constructors in ProGAL.geom3d.superposition with parameters of type Vector

Transform(Matrix rotation, Vector translation)

Transform(Matrix rotation, Vector preTranslation, Vector postTranslation)

Uses of Vector in ProGAL.geom3d.surface

Methods in ProGAL.geom3d.surface that return Vector

Vector	ParametricParaboloid.getDisplacement()
Vector	ParametricSurface.getNormal(double u, double v)
Vector	ParametricSurface.getNormal(Point p)

Methods in ProGAL.geom3d.surface with parameters of type Vector

void	ParametricParaboloid.setDisplacement(Vector v)

Constructors in ProGAL.geom3d.surface with parameters of type Vector

ParametricParaboloid(double a, double b, double c, Vector displacement)

ParametricPlane(Point p, Vector[] bases)

Uses of Vector in ProGAL.geom3d.viewer

Methods in ProGAL.geom3d.viewer that return Vector

Vector

Camera.getUp()

Methods in ProGAL.geom3d.viewer with parameters of type Vector

void	Camera.setUp(Vector v)

Uses of Vector in ProGAL.geom3d.volumes

Methods in ProGAL.geom3d.volumes that return Vector

Vector[]	OBB.getBases()
Vector	OBB.getXDir()
Vector	OBB.getYDir()
Vector	OBB.getZDir()

Methods in ProGAL.geom3d.volumes with parameters of type Vector

static OBB	OBB.createBoxFromBases(Vector[] bases, java.util.List<Point> points) Creates a bounding box enclosing the points in points using the supplied bases.
static InfCylinder	InfCylinder.createMinRadCylinderFromDirection(PointList points, Vector dir) Assumes dir is normalized
java.lang.Double	Sphere.getIntersectionAngle(Circle c, Point p, Vector dir)
void	Tetrahedron.translate(Vector v)

Constructors in ProGAL.geom3d.volumes with parameters of type Vector

OBB(Point anchor, Vector[] bases, double[] extents)

OBB(Point anchor, Vector xdir, Vector ydir, Vector zdir)

RSS(Point center, Vector[] bases, double radius)

Uses of Vector in ProGAL.math

Methods in ProGAL.math that return Vector

Vector	Matrix3x3.getColumn(int c)
Vector[]	Matrix3x3.getEigenvectors() Get the eigenvectors of a 3x3 matrix sorted by decreasing eigenvalue.
Vector	Matrix3x3.getRow(int r)
Vector	Matrix.multiply(Vector v) Apply this matrix to the vector v and return the result (without changing v).

Methods in ProGAL.math with parameters of type Vector

static Matrix	Matrix.create4x4ColumnMatrix(Vector v1, Vector v2, Vector v3, Vector v4)
static Matrix3x3	Matrix.createColumnMatrix(Vector v1, Vector v2, Vector v3)
static Matrix	Matrix.createRotationMatrix(double angle, Vector v)
static Matrix3x3	Matrix.createRowMatrix(Vector v1, Vector v2, Vector v3)
Vector	Matrix.multiply(Vector v) Apply this matrix to the vector v and return the result (without changing v).

Uses of Vector in ProGAL.proteins.beltaStructure

Methods in ProGAL.proteins.beltaStructure that return Vector

Vector

CanonicalSheet.strandOrientation(int strand)

Uses of Vector in ProGAL.proteins.beltaStructure.sheet

Methods in ProGAL.proteins.beltaStructure.sheet that return Vector

Vector	ParametricSurface.getNormal(double u, double v)
Vector	ParametricSurface.getNormal(Point p)

Uses of Vector in ProGAL.proteins.viewer

Methods in ProGAL.proteins.viewer that return Vector

Vector	StrandSurface.getNormal(double u, double v)
Vector	HelixSurface.getNormal(double u, double v)
Vector	CoilSurface.getNormal(double u, double v)