Improving the Segmentation Accuracy of Fractured Vertebrae with Dynamically Sequenced Active Appearance Models |
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Martin Roberts - University of Manchester Tim Cootes - University of Manchester Judith Adams - University of Manchester |
The accurate identification of vertebral fractures is important in diagnosing the early stages of osteoporosis. Good mean segmentation accuracy has been previously obtained for vertebrae on lateral dual x-ray absorptiometry (DXA) scans, by modelling the spine as a sequence of overlapping triplets of vertebrae. However the Active Appearance Models (AAM) used for each triplet sub-model were prone to occasionally converge to incorrect local minima, mainly in the case of severe (grade 3) fractures. The robustness of the AAM search sequence has been improved by two means: 1) ensuring a better starting solution by using information on the approximate centre of each vertebra; 2) including an alternative starting solution at each vertebral level to represent a possible severe fracture. The best of a set of normal and fractured alternative sub-model solutions was selected at each iteration. This provides a robust and accurate search method, even with multiple severe fractures present. A mean segmentation accuracy of 0.7mm was achieved on normal vertebrae, rising to 1.2mm on severely fractured vertebrae. |
Position Normalization in Automatic Cartilage Segmentation |
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Jenny Folkesson - IT University of Copenhagen Erik Dam - IT University of Copenhagen, Center for Clinical and Basic Research Ole Olsen - IT University of Copenhagen Paola Pettersen - Center for Clinical and Basic Research Claus Christiansen - Center for Clinical and Basic Research |
In clinical studies of osteoarthritis using magnetic resonance imaging, the placement of the test subject in the scanner tends to vary and this can affect the outcome of automatic image analysis methods for articular cartilage assessment, particularly in multi-center studies. We have developed an automatic iterative method that corrects for position variations by combining the two steps: shifting the cartilage towards the expected position and performing a voxel classification with the normalized position as a feature. By applying this placement adjustment scheme to an automatic knee cartilage segmentation method we show that the inter-scan reproducibility is much improved and is now as good as that of a highly trained radiologist. |
Automatic Curvature Analysis of the Articular Cartilage Surface |
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Jenny Folkesson - IT University of Copenhagen Erik Dam - IT University of Copenhagen, Center for Clinical and Basic Research Ole Olsen - IT University of Copenhagen Paola Pettersen - Center for Clinical and Basic Research Claus Christiansen - Center for Clinical and Basic Research |
In osteoarthritis (OA) the articular cartilage degenerates, thereby losing its structure and integrity. Curvature analysis of the cartilage surfaces has been suggested as a potential disease marker for OA but until now there has been few results to support that suggestion. We present two methods for surface curvature analysis, one that estimates curvature on lower scales using mean curvature flow, and one method based on normal directions of and distances between surface points given by a cartilage shape model for high scale curvature estimates. We show that both methods can distinguish between healthy and osteoarthritic groups, and the shape model based method can even distinguish healthy from mild OA with high reproducibility, indicating the potential of surface curvature in becoming powerful new disease marker for cartilage degeneration. |
Anatomically Equivalent Focal Regions Defined on the Bone Increases Precision when Measuring Cartilage Thickness from Knee MRI |
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Tomos Williams - University of Manchester Andrew Holmes - AstraZeneca John Waterton - AstraZeneca Rose Maciewicz - AstraZeneca Anthony Nash - AstraZeneca Chris Taylor - University of Manchester |
MRI cartilage measurement techniques need to be sufficiently sensitive to detect small, focal changes if they are to be used as biomarkers for OA drug development. Detailed cartilage thickness maps were constructed from MRI's of 19 healthy female volunteers. Anatomical correspondence between the volunteers was achieved by constructing optimal statistical shape models of the bones. Cartilage coverage across the cohort was used to define the region of pre-morbid sub-chondral bone and trimming boundaries which excluded the edges of the cartilage sheets. Functional sub-regions of the joint were drawn on the mean bone shapes. The regions of interest were propagated to all individuals, in an anatomically consistent manner, using the model-based correspondences. Mean cartilage thickness was measured within each region of interest. Excluding the edges of the cartilage sheet from the mean thickness measures increased the reproducibility, and hence sensitivity, of the measures. |
Automatic Detection of Erosions in Rheumatoid Arthritis |
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Georg Langs - Institute for Computer Graphics and Vision, Graz
University of Technology Philipp Peloschek - Department of Radiology, Medical University Vienna Horst Bischof - Institute for Computer Graphics and Vision, Graz University of Technology Franz Kainberger - Department of Radiology, Medical University Vienna |
In this paper a method for automatic detection of erosive destructions caused by rheumatoid arthritis is proposed. Based on hand radiographs the algorithm detects erosions by means of an appearance model learned from a training set of bones. The model is utilized to classify the texture of the bone in the vicinity of the contour with respect to erosive destructions. Quantitative results of the algorithm are reported for a set of 17 radiographs of moderately and mildly diseased hands. |
Quantitative vertebral morphometry using neighbor-conditional shape models |
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Marleen de Bruijne - IT University Of Copenhagen,
Denmark Michael T. Lund - IT University Of Copenhagen, Denmark Paola Pettersen - Center for Clinical and Basic Research, Ballerup, Denmark Laszlo B. Tanko - Center for Clinical and Basic Research, Ballerup, Denmark Mads Nielsen - IT University Of Copenhagen, Denmark |
A novel method for vertebral fracture quantification from X-ray images is presented. Using pairwise conditional shape models trained on a set of healthy spines, the most likely normal vertebra shapes are estimated conditional on all other vertebrae in the image. The differences between the true shape and the reconstructed normal shape is subsequently used as a measure of abnormality. In contrast with the current (semi-)quantitative grading strategies this method takes the full shape into account, it uses a patient-specific reference by combining population-based information on biological variation in vertebra shape and vertebra interrelations, and it provides a continuous measure of deformity. The method is demonstrated on 212 lateral spine radiographs with in total 78 fractures. The distance between prediction and true shape is 1.0 mm for unfractured vertebrae and 3.7 mm for fractures, which makes it possible to diagnose and assess the severity of a fracture. |
Automatic Cartilage Thickness Quantification using a Statistical Shape Model |
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Erik Dam - IT University of Copenhagen Jenny Folkesson - IT University of Copenhagen Paola Pettersen - Center for Clinical and Basic Research Claus Christiansen - Center for Clinical and Basic Research |
Cartilage thickness is a central indicator for monitoring osteoarthritis (OA) progression. We present a novel, automatic method for quantification of cartilage thickness from magnetic resonance imaging. First, an automatic voxel classification produces a binary segmentation of the cartilage sheet. Second, a statistical shape model is deformed into the binary segmentation. Finally, the thickness map is extracted from the shape model. We evaluate the cartilage thickness quantification on a collection of knee scans with both healthy and OA subjects. The method shows high reproducibility and proves to be able to separate healthy from OA subjects. |
MR image segmentation using phase information and a novel multiscale scheme |
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Pierrick Bourgeat - BioMedIA Lab, Autonomous Systems Laboratory,
CSIRO ICT Centre, Sydney, Australia Jurgen Fripp - BioMedIA Lab, Autonomous Systems Laboratory, CSIRO ICT Centre, Sydney, Australia Peter Stanwell - Institute for Magnetic Resonance Research, Sydney, Australia. Saadallah Ramadan - Institute for Magnetic Resonance Research, Sydney, Australia. Sebastien Ourselin - BioMedIA Lab, Autonomous Systems Laboratory, CSIRO ICT Centre, Sydney, Australia |
This paper considers the problem of automatic classification of textured tissues in 3D MRI. More specifically, it aims at validating the use of features extracted from the phase of the MR signal to improve texture discrimination in bone segmentation. This extra information provides better segmentation, compared to only using magnitude features. We also present a novel multiscale scheme to improve the speed of pixelwise based classification algorithm, such as support vector machines. This algorithm dramatically increases the speed of the segmentation process by an order of magnitude through a reduction of the number of pixels that needs to be classified in the image. |
Automatic Quantification of Cartilage Homogeneity |
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Arish Asif Qazi - IT University of Copenhagen Ole Fogh Olsen - IT University of Copenhagen Erik Dam - IT University of Copenhagen Jenny Folkesson - IT University of Copenhagen Paola Pettersen - Center for Clinical and Basic Research Claus Christiansen - Center for Clinical and Basic Research |
Osteoarthritis (OA) is a degenerative joint disease that involves the wearing down of the articular cartilage. A typical problem has been quantifying progression and early detection of the disease. In this study we develop a fully automatic method for investigating knee cartilage homogeneity on 114 manually and automatically segmented T1 knee MR images from subjects with no, mild or severe OA symptoms. To measure homogeneity we characterize the tibial and femoral compart ments in each cartilage by several statistical measures and then evaluate their ability to quantify OA progression. The discriminatory power of each measure for separating the group of healthy subjects from group of subjects having OA is tested statistically. Our method outperforms a standard measure like volume in separating healthy subjects from subjects having OA. We show that our method is reproducible through a scan-rescan evaluation from additional 31 MR images. |
Knee Images Digital Analysis: a quantitative method for individual radiographic features of knee osteoarthritis. |
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Anne Marijnissen - University Medical Center Utrecht, Rheumatology
& Clin. Immunol. Koen Vincken - University Medical Center Utrecht, Image Sciences Institute Petra Vos - University Medical Center Utrecht, Rheumatology & Clin. Immunol. Johannes Bijlsma - University Medical Center Utrecht, Rheumatology & Clin. Immunol. Wilbert Bartels - University Medical Center Utrecht, Image Sciences Institute Floris Lafeber - University Medical Center Utrecht, Rheumatology & Clin. Immunol. |
Objective evaluation of structural changes in osteoarthritis is essential for diagnosis and evaluation of disease progression. Since conventional radiography is still the gold standard, in the present study a newly developed digital method to analyze standard radiographs of knees was evaluated. Joint space width (JSW), osteophyte area, subchondral sclerosis, deviation of the angle of the joint, and eminentia height were measured using the interactive application Knee Images Digital Analysis (KIDA) on a standard PC. Enlargements on screen can be performed, when required. The application provides multiple measures for all parameters as continue variables. Two observers evaluated the radiographs on two different occasions with one-week interval. The observers were blinded to the source of the radiographs and their previous measurements. Intra- and interobserver variation was evaluated. The results demonstrate KIDA to be a reliable method to quantify and document (for follow-up) the radiographic parameters of knee osteoarthritis. |
Improved Parameter Extraction From Dynamic Contrast-Enhanced MRI Data in RA Studies |
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Olga Kubassova - University of Leeds Roger Boyle - University of Leeds Alexandra Radjenovic - Leeds General Infirmary, Leeds |
A fully automated method for analysis of Dynamic Contrast Enhanced MRI scans of the metacarpophalangeal joints of the hand and assessing the extent and magnitude of inflammatory activity in rheumatoid arthritis is put forward. The method incorporates automated segmentation, spatial registration, and a modelling of the underlying physical procedure. It affords robust and consistent quantitation of the spatial and temporal properties of 4D datasets, allows a more robust and consistent extraction of various parameters, and provides information on procedure completion, hitherto unavailable, that is of value in guiding the procedure and informing the reliability of the parameter estimates. The technique is demonstrated on 10 DEMRI studies and has potential for wider application. |
Novel Method for Quantitative Evaluation of Segmentation Outputs for Dynamic Contrast-Enhanced MRI Data in RA Studies |
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Olga Kubassova - University of Leeds Roger Boyle - University of Leeds Alexandra Radjenovic - Leeds General Infirmary, Leeds |
We introduce two new metrics for evaluation of segmentation outputs obtained from Dynamic Contrast-Enhanced MRI data. Considering a live application area, we demonstrate the shortcomings of currently accepted algorithms. We present a new supervised approach as an enhanced derivation of a state-of-the-art method, and a novel unsupervised approach, which enables automation of segmentation output assessment. The proposed discrepancy measure considers local blur, partial volume effects, intensity variations, subtle contrast changes and the inconsistency of human experts. We consider the approaches presented to be an improvement on those prevailing, and worthy of wider experiment and application. |
3D Shape Description of the Bicipital Groove: Correlation to Pathology |
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Aaron Ward - Medical Image Analysis Lab, Simon Fraser
University Ghassan Hamarneh - Medical Image Analysis Lab, Simon Fraser University Mark Schweitzer - New York University Medical Center, Hospital for Joint Diseases |
The bicipital groove (BG) of the proximal humerus retains the tendon of the long head of the biceps. It is understood that the shape of the BG is related to the probability of injury to the long biceps tendon (LBT). Measurements taken of the BG in previous studies from dry bones and radiographs (henceforth classical measurements) are of single cross sections of the humerus, and may therefore overlook important BG shape characteristics. In this study, we test the hypothesis that a novel, medial axis-based 3D shape descriptor captures all relevant features measured in previous work, plus more. To this end, we review previous studies wherein classical measurements have been taken on large numbers of BGs, yielding a distribution that reveals the nature of a normal BG. We develop an automated approach to replicating those measurements on MRI to determine, for each of our data sets, the deviation from the mean of all the classical measurements. We train a classifier by pairing our 3D representations with these deviations to evaluate the potential for computer aided diagnosis of BG pathology based on our 3D shape descriptor. |
Efficient Automatic Cartilage Segmentation |
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Erik Dam - IT University of Copenhagen Jenny Folkesson - IT University of Copenhagen Marco Loog - IT University of Copenhagen Paola Pettersen - Center for Clinical and Basic Research Claus Christiansen - Center for Clinical and Basic Research |
Cartilage volume is the most obvious quantification of cartilage breakdown when monitoring osteoarthritis progression. We present a novel algorithm for speeding up voxel classification by an order of magnitude. This new classification scheme is used for fully automatic segmentation of tibial and femoral articular knee cartilage. We evaluate the method on a collection of 114+31+25 knee MR scans of both healthy and OA subjects, and show that the segmentations are identical to the segmentation from a straight-forward voxel classification method. Furthermore, the method shows high reproducibility and proves to be able to separate healthy from OA subjects. |
3D Shape Analysis of the Supraspinatus Muscle |
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Aaron Ward - Medical Image Analysis Lab, Simon Fraser
University Ghassan Hamarneh - Medical Image Analysis Lab, Simon Fraser University Reem Ashry - New York University Medical Center, Hospital for Joint Diseases Mark Schweitzer - New York University Medical Center, Hospital for Joint Diseases |
Pathology of the supraspinatus muscle can involve tearing, which often leads to atrophy and/or retraction of the muscle. Retraction can be corrected through a pull forward operation in surgery, whereas atrophy is generally not correctable. It is therefore important to distinguish between retraction and atrophy. However, since both of these conditions are characterized by a reduction in size, we put forth a pilot study examining changes in 3D shape as they relate to pathological conditions. After segmenting the supraspinatus muscle surface from MRIs representing 57 patients, we compute several different 3D shape measures of the surfaces, and conclude that there are statistically significant differences in shape and size between pathology groups. |
Three dimensional dynamic model with different tibial plateau shapes: Analyzing tibio-femoral movement |
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Ekin Akalan - Bogazici University Mehmet Ozkan - Bogazici University Yener Temelli - Istanbul Medical University |
Abstract The objective of the present study is to create a dynamic 3D knee model which represents tibio-femoral joint surfaces, bones and ligaments by consideration of their geometric and material properties to simulate 0°-90° passive knee flexion. Tibial plateaus of the tibia and condyles of femur are modeled as ellipsoids as described in the literature. The contact forces between tibia and femur are defined as frictionless mathematical model. Anterior, posterior cruciate ligaments, medial, lateral collateral ligaments are represented as non linear elastic springs. Knee flexion with and without internal-external torque are simulated, and the results are compared with the literature for slopped and flattened medial tibial plateau models. As a result, normal internal rotation of tibia and adduction ranges are achieved for unloaded condition in flattened model, but the knee flexion with forced internal/external rotation are out of normal range for both models. Keywords: Knee, kinematics, anatomical dynamic modeling |
CyberChair 4 | Author: Richard van de Stadt (Borbala Online Conference Services) | Development supported by TRESE | Copyright © by University of Twente |